The 2-oxoglutarate dehydrogenase (OGDH) complex is an important control point in vertebrate mitochondrial oxidative metabolism, including in the citrate cycle and catabolism of alternative fuels including glutamine. It is subject to allosteric regulation by NADH and the ATP/ADP ratio, and by Ca2+ through binding to the E1 subunit. The latter involves a unique Ca2+-binding site which includes D114ADLD (site 1). Here, we describe three splice variants of E1 in which either the exon expressing this site is replaced with another exon (loss of site 1, LS1) or an additional exon is expressed leading to the insertion of 15 amino acids just downstream of site 1 (Insert), or both changes occur together (LS1/Insert). We show that all three variants are essentially Ca2+-insensitive. Comparison of massive parallel sequence (RNA-Seq) databases demonstrates predominant expression of the Ca2+-sensitive archetype form in heart and skeletal muscle, but substantial expression of the Ca2+-insensitive variants in brain, pancreatic islets and other tissues. Detailed proteomic and activity studies comparing OGDH complexes from rat heart and brain confirmed the substantial difference in expression between these tissues. The evolution of OGDH variants was explored using bioinformatics, and this indicated that Ca2+-sensitivity arose with the emergence of chordates. In all species examined, this was associated with the co-emergence of Ca2+-insensitive variants suggesting a retained requirement for the latter in some settings. Tissue-specific expression of OGDH splice variants may thus provide a mechanism that tunes the control of the enzyme to the specialized metabolic and signalling needs of individual cell types.
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May 2016
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The biological dimer of MurIMtb shown as a protein cartoon. Interface residues that form hydrogen bonding interactions or salt links are highlighted in purple and yellow. For further details see pp. 1267-1280. Image kindly provided by Kurt Krause. - PDF Icon PDF LinkFront Matter
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Research Article|
April 26 2016
Calcium-insensitive splice variants of mammalian E1 subunit of 2-oxoglutarate dehydrogenase complex with tissue-specific patterns of expression Available to Purchase
Richard M. Denton;
Richard M. Denton
1
*School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, Bristol BS8 1TD, U.K.
1To whom correspondence should be addressed (email [email protected]).
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Timothy J. Pullen;
Timothy J. Pullen
†Section of Cell Biology and Functional Genomics, Department of Medicine, ICTEM Building, Hammersmith Campus, Imperial College, du Cane Road, London W12 ONN, U.K.
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Craig T. Armstrong;
Craig T. Armstrong
*School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, Bristol BS8 1TD, U.K.
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Kate J. Heesom;
Kate J. Heesom
*School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, Bristol BS8 1TD, U.K.
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Guy A. Rutter
Guy A. Rutter
†Section of Cell Biology and Functional Genomics, Department of Medicine, ICTEM Building, Hammersmith Campus, Imperial College, du Cane Road, London W12 ONN, U.K.
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Publisher: Portland Press Ltd
Received:
January 20 2016
Revision Received:
February 29 2016
Accepted:
March 01 2016
Accepted Manuscript online:
March 02 2016
Online ISSN: 1470-8728
Print ISSN: 0264-6021
© 2016 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society
2016
Biochem J (2016) 473 (9): 1165–1178.
Article history
Received:
January 20 2016
Revision Received:
February 29 2016
Accepted:
March 01 2016
Accepted Manuscript online:
March 02 2016
Citation
Richard M. Denton, Timothy J. Pullen, Craig T. Armstrong, Kate J. Heesom, Guy A. Rutter; Calcium-insensitive splice variants of mammalian E1 subunit of 2-oxoglutarate dehydrogenase complex with tissue-specific patterns of expression. Biochem J 1 May 2016; 473 (9): 1165–1178. doi: https://doi.org/10.1042/BCJ20160135
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