LiP (lignin peroxidase) from Trametopsis cervina has an exposed catalytic tyrosine residue (Tyr181) instead of the tryptophan conserved in other lignin-degrading peroxidases. Pristine LiP showed a lag period in VA (veratryl alcohol) oxidation. However, VA-LiP (LiP after treatment with H2O2 and VA) lacked this lag, and H2O2-LiP (H2O2-treated LiP) was inactive. MS analyses revealed that VA-LiP includes one VA molecule covalently bound to the side chain of Tyr181, whereas H2O2-LiP contains a hydroxylated Tyr181. No adduct is formed in the Y171N variant. Molecular docking showed that VA binding is favoured by sandwich π stacking with Tyr181 and Phe89. EPR spectroscopy after peroxide activation of the pre-treated LiPs showed protein radicals other than the tyrosine radical found in pristine LiP, which were assigned to a tyrosine–VA adduct radical in VA-LiP and a dihydroxyphenyalanine radical in H2O2-LiP. Both radicals are able to oxidize large low-redox-potential substrates, but H2O2-LiP is unable to oxidize high-redox-potential substrates. Transient-state kinetics showed that the tyrosine–VA adduct strongly promotes (>100-fold) substrate oxidation by compound II, the rate-limiting step in catalysis. The novel activation mechanism is involved in ligninolysis, as demonstrated using lignin model substrates. The present paper is the first report on autocatalytic modification, resulting in functional alteration, among class II peroxidases.
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Research Article|
May 31 2013
Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism
Yuta Miki;
Yuta Miki
1
*Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
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Rebecca Pogni;
Rebecca Pogni
†Department of Biotechnologies, Chemistry and Pharmacy, University of Siena, I-53100 Siena, Italy
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Sandra Acebes;
Sandra Acebes
‡Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Jordi Girona 29, E-08034 Barcelona, Spain
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Fátima Lucas;
Fátima Lucas
‡Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Jordi Girona 29, E-08034 Barcelona, Spain
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Elena Fernández-Fueyo;
Elena Fernández-Fueyo
*Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
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Maria Camilla Baratto;
Maria Camilla Baratto
†Department of Biotechnologies, Chemistry and Pharmacy, University of Siena, I-53100 Siena, Italy
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María I. Fernández;
María I. Fernández
*Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
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Vivian de los Ríos;
Vivian de los Ríos
*Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
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Francisco J. Ruiz-Dueñas;
Francisco J. Ruiz-Dueñas
*Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
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Adalgisa Sinicropi;
Adalgisa Sinicropi
†Department of Biotechnologies, Chemistry and Pharmacy, University of Siena, I-53100 Siena, Italy
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Riccardo Basosi;
Riccardo Basosi
†Department of Biotechnologies, Chemistry and Pharmacy, University of Siena, I-53100 Siena, Italy
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Kenneth E. Hammel;
Kenneth E. Hammel
§USDA Forest Service, Forest Products Laboratory, One Gifford Pinchot Drive, Madison, WI 53726, U.S.A.
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Victor Guallar;
Victor Guallar
‡Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Jordi Girona 29, E-08034 Barcelona, Spain
∥Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys 23, E-08010 Barcelona, Spain
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Angel T. Martínez
Angel T. Martínez
2
*Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
2To whom correspondence should be addressed (email ATMartinez@cib.csic.es).
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Publisher: Portland Press Ltd
Received:
February 18 2013
Revision Received:
March 28 2013
Accepted:
April 03 2013
Accepted Manuscript online:
April 03 2013
Online ISSN: 1470-8728
Print ISSN: 0264-6021
© The Authors Journal compilation © 2013 Biochemical Society
2013
Biochem J (2013) 452 (3): 575–584.
Article history
Received:
February 18 2013
Revision Received:
March 28 2013
Accepted:
April 03 2013
Accepted Manuscript online:
April 03 2013
Citation
Yuta Miki, Rebecca Pogni, Sandra Acebes, Fátima Lucas, Elena Fernández-Fueyo, Maria Camilla Baratto, María I. Fernández, Vivian de los Ríos, Francisco J. Ruiz-Dueñas, Adalgisa Sinicropi, Riccardo Basosi, Kenneth E. Hammel, Victor Guallar, Angel T. Martínez; Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism. Biochem J 15 June 2013; 452 (3): 575–584. doi: https://doi.org/10.1042/BJ20130251
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