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Articles

Development of circadian rhythms in mammalian systems

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Junghyun Lee, Sevde Goker, Sookkyung Lim, Christian I. Hong
Journal: Biochemical Journal
Biochem J (2024) 481 (24): 1967–1976.
https://doi.org/10.1042/BCJ20210060
Published: 23 December 2024
View articletitled, Development of circadian rhythms in mammalian systems
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Articles

Epigenetic mechanisms linking early-life adversities and mental health

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In Collection
Epigenetics
Eduardo T. Cánepa, Bruno G. Berardino
Journal: Biochemical Journal
Biochem J (2024) 481 (10): 615–642.
https://doi.org/10.1042/BCJ20230306
Published: 09 May 2024
View articletitled, Epigenetic mechanisms linking early-life adversities and mental health
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Articles

Sperm induce a secondary increase in ATP levels in mouse eggs that is independent of Ca 2+ oscillations

Open Access
Cindy Ikie-Eshalomi, Elnur Aliyev, Sven Hoehn, Tomasz P. Jurkowski, Karl Swann
Journal: Biochemical Journal
Biochem J (2023) 480 (24): 2023–2035.
https://doi.org/10.1042/BCJ20230065
Published: 15 December 2023
View articletitled, Sperm induce a secondary increase in ATP levels in mouse eggs that is independent of Ca 2+ oscillations
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Includes: Supplementary data
Articles

Lysine methylation signaling in skeletal muscle biology: from myogenesis to clinical insights

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In Collection
Epigenetics
Eric Cordeiro-Spinetti, Scott B. Rothbart
Journal: Biochemical Journal
Biochem J (2023) 480 (23): 1969–1986.
https://doi.org/10.1042/BCJ20230223
Published: 06 December 2023
View articletitled, Lysine methylation signaling in skeletal muscle biology: from myogenesis to clinical insights
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Articles

A guide to ERK dynamics, part 2: downstream decoding

Open Access
In Collection
Cell signaling in the 21st century
Abhineet Ram, Devan Murphy, Nicholaus DeCuzzi, Madhura Patankar, Jason Hu, Michael Pargett, John G. Albeck
Journal: Biochemical Journal
Biochem J (2023) 480 (23): 1909–1928.
https://doi.org/10.1042/BCJ20230277
Published: 01 December 2023
View articletitled, A guide to ERK dynamics, part 2: downstream decoding
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Articles

Structural and functional organization of germ plasm condensates

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Austin Chiappetta, Jeffrey Liao, Siran Tian, Tatjana Trcek
Journal: Biochemical Journal
Biochem J (2022) 479 (24): 2477–2495.
https://doi.org/10.1042/BCJ20210815
Published: 19 December 2022
View articletitled, Structural and functional organization of germ plasm condensates
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Articles

Mechanisms of TNF-independent RIPK3-mediated cell death

Open Access
Bart Tummers, Douglas R. Green
Journal: Biochemical Journal
Biochem J (2022) 479 (19): 2049–2062.
https://doi.org/10.1042/BCJ20210724
Published: 14 October 2022
View articletitled, Mechanisms of TNF-independent RIPK3-mediated cell death
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Articles

Alveolar cells in the mammary gland: lineage commitment and cell death

Open Access
In Collection
Cell death and survival
Christine J. Watson
Journal: Biochemical Journal
Biochem J (2022) 479 (9): 995–1006.
https://doi.org/10.1042/BCJ20210734
Published: 12 May 2022
View articletitled, Alveolar cells in the mammary gland: lineage commitment and cell death
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Articles

Citrylglutamate synthase deficient male mice are subfertile with impaired histone and transition protein 2 removal in late spermatids

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Lihua Wang-Eckhardt, Marc Sylvester, Ivonne Becker, Jean-Pierre Allam, Matthias Eckhardt
Journal: Biochemical Journal
Biochem J (2022) 479 (9): 953–972.
https://doi.org/10.1042/BCJ20210844
Published: 06 May 2022
View articletitled, Citrylglutamate synthase deficient male mice are subfertile with impaired histone and transition protein 2 removal in late spermatids
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Includes: Supplementary data
Articles

WHIRLY1 functions in the nucleus to regulate barley leaf development and associated metabolite profiles

Open Access
Barbara Karpinska, Nurhayati Razak, Euan K. James, Jenny A. Morris, Susan R. Verrall, Peter E. Hedley, Robert D. Hancock, Christine H. Foyer
Journal: Biochemical Journal
Biochem J (2022) 479 (5): 641–659.
https://doi.org/10.1042/BCJ20210810
Published: 04 March 2022
View articletitled, WHIRLY1 functions in the nucleus to regulate barley leaf development and associated metabolite profiles
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Includes: Supplementary data
Articles

Live imaging approach of dynamic multicellular responses in ERK signaling during vertebrate tissue development

Open Access
In Collection
Towards systems biochemistry
Tsuyoshi Hirashima
Journal: Biochemical Journal
Biochem J (2022) 479 (2): 129–143.
https://doi.org/10.1042/BCJ20210557
Published: 20 January 2022
View articletitled, Live imaging approach of dynamic multicellular responses in ERK signaling during vertebrate tissue development
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Articles

Proteomic analysis identifies ZMYM2 as endogenous binding partner of TBX18 protein in 293 and A549 cells

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Timo H.-W. Lüdtke, Marc-Jens Kleppa, Reginaldo Rivera-Reyes, Fairouz Qasrawi, Dervla M. Connaughton, Shirlee Shril, Friedhelm Hildebrandt, Andreas Kispert
Journal: Biochemical Journal
Biochem J (2022) 479 (1): 91–109.
https://doi.org/10.1042/BCJ20210642
Published: 14 January 2022
View articletitled, Proteomic analysis identifies ZMYM2 as endogenous binding partner of TBX18 protein in 293 and A549 cells
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Includes: Supplementary data
Articles

An ERK5–KLF2 signalling module regulates early embryonic gene expression and telomere rejuvenation in stem cells

Open Access
Helen A. Brown, Charles A.C. Williams, Houjiang Zhou, Diana Rios-Szwed, Rosalia Fernandez-Alonso, Saria Mansoor, Liam McMulkin, Rachel Toth, Robert Gourlay, Julien Peltier, Nora Dieguez-Martinez, Matthias Trost, Jose M. Lizcano, Marios P. Stavridis, Greg M. Findlay
Journal: Biochemical Journal
Biochem J (2021) 478 (23): 4119–4136.
https://doi.org/10.1042/BCJ20210646
Published: 06 December 2021
View articletitled, An ERK5–KLF2 signalling module regulates early embryonic gene expression and telomere rejuvenation in stem cells
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Articles

Signalling dynamics in embryonic development

Open Access
Katharina F. Sonnen, Claudia Y. Janda
Journal: Biochemical Journal
Biochem J (2021) 478 (23): 4045–4070.
https://doi.org/10.1042/BCJ20210043
Published: 06 December 2021
View articletitled, Signalling dynamics in embryonic development
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Articles

Meiosis initiation: a story of two sexes in all creatures great and small

Open Access
Ieng Fong Sou, Rebecca M. Pryce, Wee-Wei Tee, Urszula Lucja McClurg
Journal: Biochemical Journal
Biochem J (2021) 478 (20): 3791–3805.
https://doi.org/10.1042/BCJ20210412
Published: 28 October 2021
View articletitled, Meiosis initiation: a story of two sexes in all creatures great and small
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Articles

Tick–human interactions: from allergic klendusity to the α-Gal syndrome

Open Access
Alejandro Cabezas-Cruz, Adnan Hodžić, Lourdes Mateos-Hernández, Marinela Contreras, José de la Fuente
Journal: Biochemical Journal
Biochem J (2021) 478 (9): 1783–1794.
https://doi.org/10.1042/BCJ20200915
Published: 14 May 2021
View articletitled, Tick–human interactions: from allergic klendusity to the α-Gal syndrome
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Articles

What we can learn from embryos to understand the mesenchymal-to-epithelial transition in tumor progression

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Yanel Bernardi, Pablo Hernán Strobl-Mazzulla
Journal: Biochemical Journal
Biochem J (2021) 478 (9): 1809–1825.
https://doi.org/10.1042/BCJ20210083
Published: 14 May 2021
View articletitled, What we can learn from embryos to understand the mesenchymal-to-epithelial transition in tumor progression
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Articles

The cooperation of cis -elements during M-cadherin promoter activation

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Yung-Jui Lin, Chien-Han Kao, Sheng-Pin Hsiao, Shen-Liang Chen
Journal: Biochemical Journal
Biochem J (2021) 478 (4): 911–926.
https://doi.org/10.1042/BCJ20200535
Published: 26 February 2021
View articletitled, The cooperation of cis -elements during M-cadherin promoter activation
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Includes: Supplementary data
Articles

Genetic activity during early plant embryogenesis

Open Access
Ran Tian, Priyanka Paul, Sanjay Joshi, Sharyn E. Perry
Journal: Biochemical Journal
Biochem J (2020) 477 (19): 3743–3767.
https://doi.org/10.1042/BCJ20190161
Published: 12 October 2020
View articletitled, Genetic activity during early plant embryogenesis
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Includes: Supplementary data
Articles

Phosphoinositide lipids in primary cilia biology

Open Access
Sarah E. Conduit, Bart Vanhaesebroeck
Journal: Biochemical Journal
Biochem J (2020) 477 (18): 3541–3565.
https://doi.org/10.1042/BCJ20200277
Published: 24 September 2020
View articletitled, Phosphoinositide lipids in primary cilia biology
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Articles

Functional characterization of a special dicistronic transcription unit encoding histone methyltransferase su(var)3-9 and translation regulator eIF2γ in Tribolium castaneum

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Xiaowen Song, Qisheng Zhong, Guifang Peng, Yanhao Ji, Yuemei Zhang, Jing Tang, Jia Xie, Jingxiu Bi, Fan Feng, Bin Li
Journal: Biochemical Journal
Biochem J (2020) 477 (16): 3059–3074.
https://doi.org/10.1042/BCJ20200444
Published: 28 August 2020
View articletitled, Functional characterization of a special dicistronic transcription unit encoding histone methyltransferase su(var)3-9 and translation regulator eIF2γ in Tribolium castaneum
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Includes: Supplementary data
Articles

Runx1 up-regulates chondrocyte to osteoblast lineage commitment and promotes bone formation by enhancing both chondrogenesis and osteogenesis

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Chen-Yi Tang, Wei Chen, Yuan Luo, Jinjin Wu, Yan Zhang, Abigail McVicar, Matthew McConnell, Yuehua Liu, Hou-De Zhou, Yi-Ping Li
Journal: Biochemical Journal
Biochem J (2020) 477 (13): 2421–2438.
https://doi.org/10.1042/BCJ20200036
Published: 02 July 2020
View articletitled, Runx1 up-regulates chondrocyte to osteoblast lineage commitment and promotes bone formation by enhancing both chondrogenesis and osteogenesis
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Includes: Supplementary data
Articles

Glut1 expression is increased by p53 reduction to switch metabolism to glycolysis during osteoblast differentiation

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Tomokazu Ohnishi, Joji Kusuyama, Kenjiro Bandow, Tetsuya Matsuguchi
Journal: Biochemical Journal
Biochem J (2020) 477 (10): 1795–1811.
https://doi.org/10.1042/BCJ20190888
Published: 21 May 2020
View articletitled, Glut1 expression is increased by p53 reduction to switch metabolism to glycolysis during osteoblast differentiation
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Includes: Supplementary data
Articles

Secreted tyrosine kinase Vlk negatively regulates Hedgehog signaling by inducing lysosomal degradation of Smoothened

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June Myoung Kim, Hyeseung Han, Minjin Bahn, Yeokyu Hur, Chang-Yeol Yeo, Dae-Won Kim
Journal: Biochemical Journal
Biochem J (2020) 477 (1): 121–136.
https://doi.org/10.1042/BCJ20190784
Published: 08 January 2020
View articletitled, Secreted tyrosine kinase Vlk negatively regulates Hedgehog signaling by inducing lysosomal degradation of Smoothened
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Includes: Supplementary data
Articles

Two distinct nucleic acid binding surfaces of Cdc5 regulate development

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Chao Wang, Mu Li, Guorui Li, Xinsen Liu, Wensheng Zhao, Bin Yu, Junfeng Liu, Jun Yang, You-Liang Peng
Journal: Biochemical Journal
Biochem J (2019) 476 (21): 3355–3368.
https://doi.org/10.1042/BCJ20190502
Published: 15 November 2019
View articletitled, Two distinct nucleic acid binding surfaces of Cdc5 regulate development
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Includes: Supplementary data
Articles

Stem cell models as an in vitro model for predictive toxicology

Open Access
Stephen Lynch, Chris S. Pridgeon, Carrie A. Duckworth, Parveen Sharma, B. Kevin Park, Chris E.P. Goldring
Journal: Biochemical Journal
Biochem J (2019) 476 (7): 1149–1158.
https://doi.org/10.1042/BCJ20170780
Published: 15 April 2019
View articletitled, Stem cell models as an in vitro model for predictive toxicology
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Articles

The DCBLD receptor family: emerging signaling roles in development, homeostasis and disease

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Anna M. Schmoker, Alicia M. Ebert, Bryan A. Ballif
Journal: Biochemical Journal
Biochem J (2019) 476 (6): 931–950.
https://doi.org/10.1042/BCJ20190022
Published: 22 March 2019
View articletitled, The DCBLD receptor family: emerging signaling roles in development, homeostasis and disease
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Includes: Supplementary data
Articles

Signalling circuits that direct early B-cell development

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Georg Petkau, Martin Turner
Journal: Biochemical Journal
Biochem J (2019) 476 (5): 769–778.
https://doi.org/10.1042/BCJ20180565
Published: 06 March 2019
View articletitled, Signalling circuits that direct early B-cell development
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Articles

Dynamic changes in Sox2 spatio-temporal expression promote the second cell fate decision through Fgf4 / Fgfr2 signaling in preimplantation mouse embryos

Open Access
Tapan Kumar Mistri, Wibowo Arindrarto, Wei Ping Ng, Choayang Wang, Leng Hiong Lim, Lili Sun, Ian Chambers, Thorsten Wohland, Paul Robson
Journal: Biochemical Journal
Biochem J (2018) 475 (6): 1075–1089.
https://doi.org/10.1042/BCJ20170418
Published: 20 March 2018
View articletitled, Dynamic changes in Sox2 spatio-temporal expression promote the second cell fate decision through Fgf4 / Fgfr2 signaling in preimplantation mouse embryos
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Includes: Supplementary data
Articles

Molecular control of stomatal development

Open Access
In Collection
Editors' pick of review article highlights published in the Biochemical Journal in 2018 & 2019
Nicholas Zoulias, Emily L. Harrison, Stuart A. Casson, Julie E. Gray
Journal: Biochemical Journal
Biochem J (2018) 475 (2): 441–454.
https://doi.org/10.1042/BCJ20170413
Published: 31 January 2018
View articletitled, Molecular control of stomatal development
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Articles

The role and mechanism of action of sperm PLC-zeta in mammalian fertilisation

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Michail Nomikos, Junaid Kashir, F. Anthony Lai
Journal: Biochemical Journal
Biochem J (2017) 474 (21): 3659–3673.
https://doi.org/10.1042/BCJ20160521
Published: 23 October 2017
View articletitled, The role and mechanism of action of sperm PLC-zeta in mammalian fertilisation
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Articles

Male infertility-linked point mutation reveals a vital binding role for the C2 domain of sperm PLCζ

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Michail Nomikos, Panagiotis Stamatiadis, Jessica R. Sanders, Konrad Beck, Brian L. Calver, Luke Buntwal, Morgan Lofty, Zili Sideratou, Karl Swann, F. Anthony Lai
Journal: Biochemical Journal
Biochem J (2017) 474 (6): 1003–1016.
https://doi.org/10.1042/BCJ20161057
Published: 07 March 2017
View articletitled, Male infertility-linked point mutation reveals a vital binding role for the C2 domain of sperm PLCζ
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Articles

A role for prolyl isomerase PIN1 in the phosphorylation-dependent modulation of PRRXL1 function

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Ricardo Soares-dos-Reis, Ana Sofia Pessoa, Ana Filipa Dias, Miguel Falcão, Mariana Raimundo Matos, Rui Vitorino, Filipe Almeida Monteiro, Deolinda Lima, Carlos Reguenga
Journal: Biochemical Journal
Biochem J (2017) 474 (5): 683–697.
https://doi.org/10.1042/BCJ20160560
Published: 20 February 2017
View articletitled, A role for prolyl isomerase PIN1 in the phosphorylation-dependent modulation of PRRXL1 function
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Articles

Plant cell wall signalling and receptor-like kinases

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Sebastian Wolf
Journal: Biochemical Journal
Biochem J (2017) 474 (4): 471–492.
https://doi.org/10.1042/BCJ20160238
Published: 03 February 2017
View articletitled, Plant cell wall signalling and receptor-like kinases
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Articles

Interrogation of a lacrimo-auriculo-dento-digital syndrome protein reveals novel modes of fibroblast growth factor 10 (FGF10) function

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Marta Mikolajczak, Timothy Goodman, Mohammad K. Hajihosseini
Journal: Biochemical Journal
Biochem J (2016) 473 (24): 4593–4607.
https://doi.org/10.1042/BCJ20160441
Published: 09 December 2016
View articletitled, Interrogation of a lacrimo-auriculo-dento-digital syndrome protein reveals novel modes of fibroblast growth factor 10 (FGF10) function
Open the PDF for Interrogation of a lacrimo-auriculo-dento-digital syndrome protein reveals novel modes of fibroblast growth factor 10 (FGF10) function in another window
Includes: Supplementary data
Articles

The zebrafish homologs of SET/I2PP2A oncoprotein: expression patterns and insights into their physiological roles during development

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Iliana Serifi, Eleni Tzima, Katerina Soupsana, Zoe Karetsou, Dimitris Beis, Thomais Papamarcaki
Journal: Biochemical Journal
Biochem J (2016) 473 (24): 4609–4627.
https://doi.org/10.1042/BCJ20160523
Published: 09 December 2016
View articletitled, The zebrafish homologs of SET/I2PP2A oncoprotein: expression patterns and insights into their physiological roles during development
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Includes: Supplementary data
Articles

The silent information regulator 1 (Sirt1) is a positive regulator of the Notch pathway in Drosophila

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Matej Horvath, Zorana Mihajlovic, Vera Slaninova, Raquel Perez-Gomez, Yuri Moshkin, Alena Krejci
Journal: Biochemical Journal
Biochem J (2016) 473 (22): 4129–4143.
https://doi.org/10.1042/BCJ20160563
Published: 10 November 2016
View articletitled, The silent information regulator 1 (Sirt1) is a positive regulator of the Notch pathway in Drosophila
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Includes: Supplementary data
Articles

The role of the mtDNA set point in differentiation, development and tumorigenesis

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Xin Sun, Justin C. St. John
Journal: Biochemical Journal
Biochem J (2016) 473 (19): 2955–2971.
https://doi.org/10.1042/BCJ20160008
Published: 27 September 2016
View articletitled, The role of the mtDNA set point in differentiation, development and tumorigenesis
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Articles

CD133-positive dermal papilla-derived Wnt ligands regulate postnatal hair growth

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Linli Zhou, Kun Yang, April Carpenter, Richard A. Lang, Thomas Andl, Yuhang Zhang
Journal: Biochemical Journal
Biochem J (2016) 473 (19): 3291–3305.
https://doi.org/10.1042/BCJ20160466
Published: 27 September 2016
View articletitled, CD133-positive dermal papilla-derived Wnt ligands regulate postnatal hair growth
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Articles

The role of TREX in gene expression and disease

Open Access
Catherine G. Heath, Nicolas Viphakone, Stuart A. Wilson
Journal: Biochemical Journal
Biochem J (2016) 473 (19): 2911–2935.
https://doi.org/10.1042/BCJ20160010
Published: 27 September 2016
View articletitled, The role of TREX in gene expression and disease
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Articles

Cdk2 catalytic activity is essential for meiotic cell division in vivo

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Sangeeta Chauhan, M. Kasim Diril, Joanna H.S. Lee, Xavier Bisteau, Vanessa Manoharan, Deepak Adhikari, Chandrahas Koumar Ratnacaram, Baptiste Janela, Juliane Noffke, Florent Ginhoux, Vincenzo Coppola, Kui Liu, Lino Tessarollo, Philipp Kaldis
Journal: Biochemical Journal
Biochem J (2016) 473 (18): 2783–2798.
https://doi.org/10.1042/BCJ20160607
Published: 12 September 2016
View articletitled, Cdk2 catalytic activity is essential for meiotic cell division in vivo
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Includes: Supplementary data
Articles

Zinc transporter ZIP10 forms a heteromer with ZIP6 which regulates embryonic development and cell migration

Open Access
Kathryn M. Taylor, Issa A. Muraina, Dylan Brethour, Gerold Schmitt-Ulms, Thirayost Nimmanon, Silvia Ziliotto, Peter Kille, Christer Hogstrand
Journal: Biochemical Journal
Biochem J (2016) 473 (16): 2531–2544.
https://doi.org/10.1042/BCJ20160388
Published: 11 August 2016
View articletitled, Zinc transporter ZIP10 forms a heteromer with ZIP6 which regulates embryonic development and cell migration
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Includes: Supplementary data
Articles

E2F and GATA switches turn off WD repeat domain 77 expression in differentiating cells

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Min Yu, Ulrica Wang, Zhengxin Wang
Journal: Biochemical Journal
Biochem J (2016) 473 (15): 2331–2343.
https://doi.org/10.1042/BCJ20160130
Published: 28 July 2016
View articletitled, E2F and GATA switches turn off WD repeat domain 77 expression in differentiating cells
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Includes: Supplementary data
Articles

The ADAMTS hyalectanase family: biological insights from diverse species

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Carolyn M. Dancevic, Daniel R. McCulloch, Alister C. Ward
Journal: Biochemical Journal
Biochem J (2016) 473 (14): 2011–2022.
https://doi.org/10.1042/BCJ20160148
Published: 12 July 2016
View articletitled, The ADAMTS hyalectanase family: biological insights from diverse species
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Articles

Foxa2 and Hif1ab regulate maturation of intestinal goblet cells by modulating agr2 expression in zebrafish embryos

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Yun-Ren Lai, Yu-Fen Lu, Huang-Wei Lien, Chang-Jen Huang, Sheng-Ping L. Hwang
Journal: Biochemical Journal
Biochem J (2016) 473 (14): 2205–2218.
https://doi.org/10.1042/BCJ20160392
Published: 12 July 2016
View articletitled, Foxa2 and Hif1ab regulate maturation of intestinal goblet cells by modulating agr2 expression in zebrafish embryos
Open the PDF for Foxa2 and Hif1ab regulate maturation of intestinal goblet cells by modulating agr2 expression in zebrafish embryos in another window
Includes: Supplementary data