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The RNA-binding protein HuR regulates intestinal epithelial restitution by modulating Caveolin-1 gene expression

Shan Cao, Lan Xiao, Junyao Wang, Guodong Chen, Yulan Liu

Biochem J (2021) 478 (1): 247–260.

https://doi.org/10.1042/BCJ20200372

Published: 15 January 2021

...Shan Cao; Lan Xiao; Junyao Wang; Guodong Chen; Yulan Liu The integrity of the intestinal mucosal barrier protects hosts against pathological conditions. Early mucosal restitution after wounding refers to epithelial cell migration into a defect. The RNA-binding protein HuR plays an important role...

View articletitled, The RNA-binding protein HuR regulates intestinal epithelial restitution by modulating Caveolin-1 gene expression

Articles

Novel molecular aspects of the CRISPR backbone protein ‘Cas7’ from cyanobacteria

Prakash Kalwani, Devashish Rath, Anand Ballal

Biochem J (2020) 477 (5): 971–983.

https://doi.org/10.1042/BCJ20200026

Published: 06 March 2020

... − ) were subjected to denaturing PAGE, transferred onto nitrocellulose membrane and probed with the Alr1562 polyclonal antiserum. The purified Alr1562 protein (obtained from C) is indicated by arrow. Anabaena Cas7 CRISPR CRISPR type I-D cyanobacteria RNA-binding protein Many...

View articletitled, Novel molecular aspects of the CRISPR backbone protein ‘Cas7’ from cyanobacteria

Includes: Supplementary data

Articles

Y-box proteins combine versatile cold shock domains and arginine-rich motifs (ARMs) for pleiotropic functions in RNA biology

Kenneth C. Kleene

Biochem J (2018) 475 (17): 2769–2784.

https://doi.org/10.1042/BCJ20170956

Published: 11 September 2018

...Kenneth C. Kleene Y-box proteins are single-strand DNA- and RNA-binding proteins distinguished by a conserved cold shock domain (CSD) and a variable C-terminal domain organized into alternating short modules rich in basic or acidic amino acids. A huge literature depicts Y-box proteins as highly...

View articletitled, Y-box proteins combine versatile cold shock domains and arginine-rich motifs (ARMs) for pleiotropic functions in RNA biology

Includes: Supplementary data

Articles

Global translation variations in host cells upon attack of lytic and sublytic Staphylococcus aureus α-haemolysin

Massimiliano Clamer, Toma Tebaldi, Marta Marchioretto, Paola Bernabò, Efrem Bertini, Graziano Guella, Mauro Dalla Serra, Alessandro Quattrone, Gabriella Viero

Biochem J (2015) 472 (1): 83–95.

https://doi.org/10.1042/BJ20150284

Published: 30 October 2015

... and host cells. So far, the activation of host translational control mechanisms by bacterial toxins, owing to specific recruitment of mRNAs, RNA-binding proteins (RBPs) and ncRNAs (non-coding RNAs), are far from being understood. In the present study, we characterize for the first time the changes...

View articletitled, Global translation variations in host cells upon attack of lytic and sublytic Staphylococcus aureus α-haemolysin

Includes: Supplementary data

Articles

Solution structure of the RNA-binding cold-shock domain of the Chlamydomonas reinhardtii NAB1 protein and insights into RNA recognition

Anne L. Sawyer, Michael J. Landsberg, Ian L. Ross, Olaf Kruse, Mehdi Mobli, Ben Hankamer

Biochem J (2015) 469 (1): 97–106.

https://doi.org/10.1042/BJ20150217

Published: 19 June 2015

... complex (LHC) regulation nuclear magnetic resonance (NMR) RNA-binding protein translational repressor The evolution of the machinery in photoautotrophs (green plants, photosynthetic bacteria and algae) that drives oxygenic photosynthesis has taken place over billions of years. Optimal...

View articletitled, Solution structure of the RNA-binding cold-shock domain of the Chlamydomonas reinhardtii NAB1 protein and insights into RNA recognition

Includes: Supplementary data

Articles

DNA polymerase η is regulated by poly(rC)-binding protein 1 via mRNA stability

Cong Ren, Seong-Jun Cho, Yong-Sam Jung, Xinbin Chen

Biochem J (2014) 464 (3): 377–386.

https://doi.org/10.1042/BJ20141164

Published: 05 December 2014

... membrane and then probed with primary and secondary antibodies, followed by chemiluminescent detection. AU-rich element mRNA decay p53 poly(rC)-binding protein 1 (PCBP1) DNA polymerase η (POLH) RNA-binding protein POLH (DNA polymerase η), a member of the Y-family DNA polymerases...

View articletitled, DNA polymerase η is regulated by poly(rC)-binding protein 1 via mRNA stability

Articles

A single element in the 3′UTR of the apical sodium-dependent bile acid transporter controls both stabilization and destabilization of mRNA

Dellys M. Soler, Ayantika Ghosh, Frank Chen, Benjamin L. Shneider

Biochem J (2014) 462 (3): 547–553.

https://doi.org/10.1042/BJ20140070

Published: 22 August 2014

...Dellys M. Soler; Ayantika Ghosh; Frank Chen; Benjamin L. Shneider mRNA stability appears to play a key role in the ontogenic regulation of the apical sodium-dependent bile acid transporter (ASBT). The RNA-binding proteins Hu antigen R (HuR) and tristetraprolin (TTP) stabilize and destabilize ASBT...

View articletitled, A single element in the 3′UTR of the apical sodium-dependent bile acid transporter controls both stabilization and destabilization of mRNA

Articles

The multifunctional poly(A)-binding protein (PABP) 1 is subject to extensive dynamic post-translational modification, which molecular modelling suggests plays an important role in co-ordinating its activities

Matthew Brook, Lora McCracken, James P. Reddington, Zhi-Liang Lu, Nicholas A. Morrice, Nicola K. Gray

Biochem J (2012) 441 (3): 803–816.

https://doi.org/10.1042/BJ20111474

Published: 16 January 2012

... is properly cited. mRNA translation poly(A)-binding protein (PABP) poly(A)-binding-protein-interacting motif 2 (PAM2)–poly(A)binding protein C-terminal domain (PABC) interaction posttranscriptional control post-translational modification RNA-binding protein Ensuring co-ordinated...

View articletitled, The multifunctional poly(A)-binding protein (PABP) 1 is subject to extensive dynamic post-translational modification, which molecular modelling suggests plays an important role in co-ordinating its activities

Includes: Supplementary data

Articles

Functional diversity of the hnRNPs: past, present and perspectives

Siew Ping Han, Yue Hang Tang, Ross Smith

Biochem J (2010) 430 (3): 379–392.

https://doi.org/10.1042/BJ20100396

Published: 27 August 2010

...Siew Ping Han; Yue Hang Tang; Ross Smith The hnRNPs (heterogeneous nuclear ribonucleoproteins) are RNA-binding proteins with important roles in multiple aspects of nucleic acid metabolism, including the packaging of nascent transcripts, alternative splicing and translational regulation. Although...

View articletitled, Functional diversity of the hnRNPs: past, present and perspectives

Articles

Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe–S clusters and interact with stromal HSP70B

Karolin V. Dorn, Felix Willmund, Christian Schwarz, Christine Henselmann, Thomas Pohl, Barbara Hess, Daniel Veyel, Björn Usadel, Thorsten Friedrich, Jörg Nickelsen, Michael Schroda

Biochem J (2010) 427 (2): 205–215.

https://doi.org/10.1042/BJ20091412

Published: 29 March 2010

... (CDJ) J-domain protein redox regulation RNA-binding protein Compared with the well-studied HSP70 systems in bacteria, and most compartments of the eukaryotic cell [cytosol, ER (endoplasmic reticulum) and mitochondria], rather little is known about HSP70 systems in chloroplasts...

View articletitled, Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe–S clusters and interact with stromal HSP70B

Includes: Supplementary data

Articles

Poly(A)-binding protein (PABP): a common viral target

Richard W. P. Smith, Nicola K. Gray

Biochem J (2010) 426 (1): 1–12.

https://doi.org/10.1042/BJ20091571

Published: 27 January 2010

... host cell shut-off poly(A)-binding protein (PABP) RNA-binding protein translational activation and/or repression translation initiation virus Viruses are intracellular parasites that depend upon the cells they infect for the production of new virus particles. They are remarkably diverse...

View articletitled, Poly(A)-binding protein (PABP): a common viral target

Includes: Multimedia, Supplementary data

Articles

Structural studies on the RNA-recognition motif of NELF E, a cellular negative transcription elongation factor involved in the regulation of HIV transcription

Jampani N. Rao, Liane Neumann, Sabine Wenzel, Kristian Schweimer, Paul Rösch, Birgitta M. Wöhrl

Biochem J (2006) 400 (3): 449–456.

https://doi.org/10.1042/BJ20060421

Published: 28 November 2006

... restriction sites into the E. coli expression vector pET15b (Novagen). The soluble recombinant protein contained an N-terminal His 6 tag ( Figure 1 ). HIV termination/anti-termination negative elongation factor E (NELF E) NMR structure RNA-binding protein transactivation-response element (TAR...

View articletitled, Structural studies on the RNA-recognition motif of NELF E, a cellular negative transcription elongation factor involved in the regulation of HIV transcription

Articles

CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

Julien Marquis, Luc Paillard, Yann Audic, Bertrand Cosson, Olivier Danos, Christine Le Bec, H. Beverley Osborne

Biochem J (2006) 400 (2): 291–301.

https://doi.org/10.1042/BJ20060490

Published: 14 November 2006

...Julien Marquis; Luc Paillard; Yann Audic; Bertrand Cosson; Olivier Danos; Christine Le Bec; H. Beverley Osborne CUG-BP1 [CUG-binding protein 1 also called CELF (CUG-BP1 and ETR3 like factors) 1] is a human RNA-binding protein that has been implicated in the control of splicing and mRNA translation...

View articletitled, CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

Includes: Supplementary data

Articles

Staufen1 is imported into the nucleolus via a bipartite nuclear localization signal and several modulatory determinants

Catherine Martel, Paolo Macchi, Luc Furic, Michael A. Kiebler, Luc Desgroseillers

Biochem J (2006) 393 (1): 245–254.

https://doi.org/10.1042/BJ20050694

Published: 12 December 2005

... 2005 The Biochemical Society, London 2006 mRNA localization nuclear import nuclear localization signal ribonucleoprotein RNA-binding protein Staufen mRNA localization is an important mechanism allowing precise spatial and temporal expression of proteins. Many biological...

View articletitled, Staufen1 is imported into the nucleolus via a bipartite nuclear localization signal and several modulatory determinants

Articles

Archaeal Pyrococcus furiosus thymidylate synthase 1 is an RNA-binding protein

Akio Kanai, Asako Sato, Jun Imoto, Masaru Tomita

Biochem J (2006) 393 (1): 373–379.

https://doi.org/10.1042/BJ20050608

Published: 12 December 2005

... 2005 19 9 2005 21 9 2005 21 9 2005 The Biochemical Society, London 2006 archaea in vitro translation Pyrococcus furiosus RNA-binding protein stem–loop structure thymidylate synthase A DNA fragment containing the T7 RNA polymerase promoter and the entire Pf...

View articletitled, Archaeal Pyrococcus furiosus thymidylate synthase 1 is an RNA-binding protein

Includes: Supplementary data

Articles

Autosomal dominant retinitis pigmentosa mutations in inosine 5′-monophosphate dehydrogenase type I disrupt nucleic acid binding

Sarah E. Mortimer, Lizbeth Hedstrom

Biochem J (2005) 390 (1): 41–47.

https://doi.org/10.1042/BJ20042051

Published: 09 August 2005

...-stranded nucleic acids, although the physiological role of this activity has not been identified [ 10 , 11 ]. The Biochemical Society, London 2005 cystathionine β-synthase domain (CBS domain) inosine 5′-monophosphate dehydrogenase (IMPDH) nucleic acid retinitis pigmentosa RNA-binding protein...

View articletitled, Autosomal dominant retinitis pigmentosa mutations in inosine 5′-monophosphate dehydrogenase type I disrupt nucleic acid binding

Articles

Endothelin-1 expression is strongly repressed by AU-rich elements in the 3′-untranslated region of the gene

Francisco M. REIMUNDE, Cristina CASTAÑARES, Mariano REDONDO-HORCAJO, Santiago LAMAS, Fernando RODRÍGUEZ-PASCUAL

Biochem J (2005) 387 (3): 763–772.

https://doi.org/10.1042/BJ20041687

Published: 26 April 2005

[email protected] ). 5 10 2004 9 12 2004 14 12 2004 14 12 2004 The Biochemical Society, London 2005 AU-rich element endothelin mRNA stability posttranscriptional regulation RNA-binding protein 3′-untranslated region Endothelial cells play a key role in the local...

View articletitled, Endothelin-1 expression is strongly repressed by AU-rich elements in the 3′-untranslated region of the gene

Articles

Characterization of Staufen 1 ribonucleoprotein complexes

Cornelia BRENDEL, Monika REHBEIN, Hans-Jürgen KREIENKAMP, Friedrich BUCK, Dietmar RICHTER, Stefan KINDLER

Biochem J (2004) 384 (2): 239–246.

https://doi.org/10.1042/BJ20040812

Published: 23 November 2004

...Cornelia BRENDEL; Monika REHBEIN; Hans-Jürgen KREIENKAMP; Friedrich BUCK; Dietmar RICHTER; Stefan KINDLER In Drosophila oocytes and neuroblasts, the double-stranded RNA binding protein Staufen assembles into ribonucleoprotein particles, which mediate cytoplasmic mRNA trafficking and translation...

View articletitled, Characterization of Staufen 1 ribonucleoprotein complexes

Articles

Asc1p, a WD40-domain containing adaptor protein, is required for the interaction of the RNA-binding protein Scp160p with polysomes

Sonja BAUM, Margarethe BITTINS, Steffen FREY, Matthias SEEDORF

Biochem J (2004) 380 (3): 823–830.

https://doi.org/10.1042/bj20031962

Published: 15 June 2004

... heterogeneous nuclear ribonucleoprotein K-homology domain (KH domain) ribosome RNA-binding protein signalling complex translation Abbreviations used: BMH, bis-maleimidohexane; BMOE, bis-maleimidoethane; DTT, dithiothreitol; eEF1A, translation elongation factor 1A; eIF, eukaryotic translation...

View articletitled, Asc1p, a WD40-domain containing adaptor protein, is required for the interaction of the RNA-binding protein Scp160p with polysomes

Articles

Inosine 5′-monophosphate dehydrogenase binds nucleic acids in vitro and in vivo

Jeremy E. McLEAN, Nobuko HAMAGUCHI, Peter BELENKY, Sarah E. MORTIMER, Martin STANTON, Lizbeth HEDSTROM

Biochem J (2004) 379 (2): 243–251.

https://doi.org/10.1042/bj20031585

Published: 15 April 2004

... 1 2004 6 2 2004 6 2 2004 The Biochemical Society, London ©2004 2004 cystathione β-synthase (CBS) domain DNA-binding protein inosine 5′-monophosphate (IMP) dehydrogenase nucleic acid RNA-binding protein Abbreviations used: DTT, dithiothreitol; CBS, cystathione β...

View articletitled, Inosine 5′-monophosphate dehydrogenase binds nucleic acids in vitro and in vivo

Articles

Characterization of a cis-acting regulatory element in the protein-coding region of human dihydrofolate reductase mRNA

Ningwen TAI, John C. SCHMITZ, Tian-min CHEN, Edward CHU

Biochem J (2004) 378 (3): 999–1006.

https://doi.org/10.1042/bj20031396

Published: 15 March 2004

...Ningwen TAI; John C. SCHMITZ; Tian-min CHEN; Edward CHU Previous studies have shown that human DHFR (dihydrofolate reductase), in addition to its critical role in DNA biosynthesis, functions as an RNA-binding protein. The interaction between DHFR and its own mRNA results in translational repression...

View articletitled, Characterization of a cis-acting regulatory element in the protein-coding region of human dihydrofolate reductase mRNA

Articles

Nuclear transit of human zipcode-binding protein IMP1

Jacob NIELSEN, Sidsel K. ADOLPH, Ewa RAJPERT-De MEYTS, Jens LYKKE-ANDERSEN, Grete KOCH, Jan CHRISTIANSEN, Finn C. NIELSEN

Biochem J (2003) 376 (2): 383–391.

https://doi.org/10.1042/bj20030943

Published: 01 December 2003

...-0347, U.S.A. 2 To whom correspondence should be addressed (e-mail [email protected] ). 24 6 2003 4 8 2003 18 8 2003 18 8 2003 The Biochemical Society, London ©2003 2003 K homology domain mRNA export NES (nuclear export signal) RNA-binding protein...

View articletitled, Nuclear transit of human zipcode-binding protein IMP1

Articles

Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus

Akio KANAI, Hanako OIDA, Nana MATSUURA, Hirofumi DOI

Biochem J (2003) 372 (1): 253–261.

https://doi.org/10.1042/bj20021968

Published: 15 May 2003

... Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus Akio KANAI1, Hanako OIDA, Nana MATSUURA and Hirofumi DOI2 Doi Bioasymmetry Project, Exploratory Research for Advanced Technology (ERATO), Japan Science and Technology Corporation, 4-1-8...

View articletitled, Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus

Articles

Molecular mapping of the determinants involved in human Staufen–ribosome association

Ming LUO, Thomas F. DUCHAÎNE, Luc DesGROSEILLERS

Biochem J (2002) 365 (3): 817–824.

https://doi.org/10.1042/bj20020263

Published: 01 August 2002

...Ming LUO; Thomas F. DUCHAÎNE; Luc DesGROSEILLERS The human double-stranded (ds) RNA-binding protein Staufen (hStau) is considered to have a role in RNA transport and its localization. By using sedimentation analysis on sucrose gradients, we showed that the Staufen isoform with an apparent molecular...

View articletitled, Molecular mapping of the determinants involved in human Staufen–ribosome association

Articles

The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold

Esmeralda A. WOESTENENK, George M. GONGADZE, Dmitry V. SHCHERBAKOV, Alexey V. RAK, Maria B. GARBER, Torleif HÄRD, Helena BERGLUND

Biochem J (2002) 363 (3): 553–561.

https://doi.org/10.1042/bj3630553

Published: 24 April 2002

... Data Bank under accession code 1ILY. 5 11 2001 21 1 2002 15 2 2002 The Biochemical Society, London ©2002 2002 NMR spectroscopy protein structure ribosome RNA-binding protein Abbreviations used: NOE, nuclear Overhauser enhancement; NOESY, NOE spectroscopy; HSQC...

View articletitled, The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold

Articles

The 72/74-kDa polypeptides of the 70–110S large heterogeneous nuclear ribonucleoprotein complex (LH-nRNP) represent a discrete subset of the hnRNP M protein family

Panayiota KAFASLA, Meropi PATRINOU-GEORGOULA, Apostolia GUIALIS

Biochem J (2000) 350 (2): 495–503.

https://doi.org/10.1042/bj3500495

Published: 23 August 2000

..., hnRNP M polypeptide, hnRNP protein, RNA-binding protein. alternative splicing as well as from extensive post-translational modifications such as phosphorylation and methylation of ar- ginine. They have a common modular structure with a highly conserved N-terminal RNA-binding domain (RBD) and a C...

View articletitled, The 72/74-kDa polypeptides of the 70–110S large heterogeneous nuclear ribonucleoprotein complex (LH-nRNP) represent a discrete subset of the hnRNP M protein family

Articles

Enzymic methylation of arginyl residues in -Gly-Arg-Gly- peptides

Young-Lan HYUN, D. Betty LEW, Seung Hee PARK, Chan-Wha KIM, Woon Ki PAIK, Sangduk KIM

Biochem J (2000) 348 (3): 573–578.

https://doi.org/10.1042/bj3480573

Published: 07 June 2000

... and arginine-rich motifs. The amino acid sequences of the stimulator of HIV-1 TAR (Tat-responsive element) RNA-binding protein (SRB) and fibronectin also show the presence of the internal -Gly-Arg-Gly- (-GRG-) sequence, which is potentially methylatable by the methyltransferase. To investigate the sequence...

View articletitled, Enzymic methylation of arginyl residues in -Gly-Arg-Gly- peptides

Articles

Oxalomalate, a competitive inhibitor of aconitase, modulates the RNA-binding activity of iron-regulatory proteins

Michela FESTA, Alfredo COLONNA, Concetta PIETROPAOLO, Alfredo RUFFO

Biochem J (2000) 348 (2): 315–320.

https://doi.org/10.1042/bj3480315

Published: 23 May 2000

... should be addressed (e-mail alfcolon@;unina.it). 4 1 2000 29 2 2000 27 3 2000 The Biochemical Society, London © 2000 2000 α-hydroxy-β-oxalosuccinic acid iron metabolism RNA-binding protein Biochem. J. (2000) 348, 315 320 (Printed in Great Britain) 315 Oxalomalate...

View articletitled, Oxalomalate, a competitive inhibitor of aconitase, modulates the RNA-binding activity of iron-regulatory proteins

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The RNA-binding protein HuR regulates intestinal epithelial restitution by modulating Caveolin-1 gene expression

Novel molecular aspects of the CRISPR backbone protein ‘Cas7’ from cyanobacteria

Y-box proteins combine versatile cold shock domains and arginine-rich motifs (ARMs) for pleiotropic functions in RNA biology

Global translation variations in host cells upon attack of lytic and sublytic Staphylococcus aureus α-haemolysin

Solution structure of the RNA-binding cold-shock domain of the Chlamydomonas reinhardtii NAB1 protein and insights into RNA recognition

DNA polymerase η is regulated by poly(rC)-binding protein 1 via mRNA stability

A single element in the 3′UTR of the apical sodium-dependent bile acid transporter controls both stabilization and destabilization of mRNA

The multifunctional poly(A)-binding protein (PABP) 1 is subject to extensive dynamic post-translational modification, which molecular modelling suggests plays an important role in co-ordinating its activities

Functional diversity of the hnRNPs: past, present and perspectives

Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe–S clusters and interact with stromal HSP70B

Poly(A)-binding protein (PABP): a common viral target

Structural studies on the RNA-recognition motif of NELF E, a cellular negative transcription elongation factor involved in the regulation of HIV transcription

CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

Staufen1 is imported into the nucleolus via a bipartite nuclear localization signal and several modulatory determinants

Archaeal Pyrococcus furiosus thymidylate synthase 1 is an RNA-binding protein

Autosomal dominant retinitis pigmentosa mutations in inosine 5′-monophosphate dehydrogenase type I disrupt nucleic acid binding

Endothelin-1 expression is strongly repressed by AU-rich elements in the 3′-untranslated region of the gene

Characterization of Staufen 1 ribonucleoprotein complexes

Asc1p, a WD40-domain containing adaptor protein, is required for the interaction of the RNA-binding protein Scp160p with polysomes

Inosine 5′-monophosphate dehydrogenase binds nucleic acids in vitro and in vivo

Characterization of a cis-acting regulatory element in the protein-coding region of human dihydrofolate reductase mRNA

Nuclear transit of human zipcode-binding protein IMP1

Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus

Molecular mapping of the determinants involved in human Staufen–ribosome association

The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold

The 72/74-kDa polypeptides of the 70–110S large heterogeneous nuclear ribonucleoprotein complex (LH-nRNP) represent a discrete subset of the hnRNP M protein family

Enzymic methylation of arginyl residues in -Gly-Arg-Gly- peptides

Oxalomalate, a competitive inhibitor of aconitase, modulates the RNA-binding activity of iron-regulatory proteins

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