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Keywords: Saccharomyces cerevisiae
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Articles

Mitigating methylglyoxal-induced glycation stress: the protective role of iron, copper, and manganese coordination compounds in Saccharomyces cerevisiae

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Maria Eduarda S. F. do Espírito Santo, Bárbara F. Frascino, Larissa M. M. Mattos, Daniele C. Pires, Simone S. C. de Oliveira, Lucas B. Menezes, Bernardo F. Braz, Ricardo E. Santeli, André L. S. Santos, Adolfo Horn, Jr, Christiane Fernandes, Marcos D. Pereira
Journal: Biochemical Journal
Biochem J (2024) 481 (23): 1771–1786.
https://doi.org/10.1042/BCJ20240390
Published: 28 November 2024
... potential of a series of complexes: [Cu(II)(BMPA)Cl 2 ] (1) , [Fe(III)(BMPA)Cl 3 ] (2) , and [Cl(BMPA)MnII-(μ-Cl)2-MnII(BMPA)-(μ-Cl)- MnII(BMPA)(Cl) 2 ]•5H 2 O (3) , all synthesized with the ligand bis-(2-pyridylmethyl)amine (BMPA) in Saccharomyces cerevisiae exposed to G-iS caused by methylglyoxal (MG...
View articletitled, Mitigating methylglyoxal-induced glycation stress: the protective role of iron, copper, and manganese coordination compounds in Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

Mitophagy in yeast: known unknowns and unknown unknowns

Open Access
Hagai Abeliovich
Journal: Biochemical Journal
Biochem J (2023) 480 (20): 1639–1657.
https://doi.org/10.1042/BCJ20230279
Published: 18 October 2023
... and muscle cells. Although the mechanistic studies of mitophagy in mammalian cells were initiated after the initial mechanistic findings in Saccharomyces cerevisiae , our current understanding of the physiological role of mitophagy in yeast remains more limited, despite the presence of better-defined assays...
View articletitled, Mitophagy in yeast: known unknowns and unknown unknowns
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Articles

Proteomic analysis of dietary restriction in yeast reveals a role for Hsp26 in replicative lifespan extension

Open Access
Richard Campion, Leanne Bloxam, Kimberley Burrow, Philip J. Brownridge, Daniel R. Pentland, Patricia Thomas, Campbell W. Gourlay, Claire E. Eyers, Jeff W. Barclay, Alan Morgan
Journal: Biochemical Journal
Biochem J (2021) 478 (24): 4153–4167.
https://doi.org/10.1042/BCJ20210432
Published: 16 December 2021
... that sHSPs may be universally conserved effectors of longevity. aging mitochondria molecular chaperones Saccharomyces cerevisiae Analysis and visualisation of genetic and protein interactions within the proteomic data was performed with the open-source software Cytoscape (https...
View articletitled, Proteomic analysis of dietary restriction in yeast reveals a role for Hsp26 in replicative lifespan extension
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Includes: Supplementary data
Articles

Amino acid starvation inhibits autophagy in lipid droplet-deficient cells through mitochondrial dysfunction

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Pierre Voisin, Marianne Bernard, Thierry Bergès, Matthieu Régnacq
Journal: Biochemical Journal
Biochem J (2020) 477 (18): 3613–3623.
https://doi.org/10.1042/BCJ20200551
Published: 28 September 2020
...Pierre Voisin; Marianne Bernard; Thierry Bergès; Matthieu Régnacq Lipid droplets are ubiquitous organelles in eukaryotes that act as storage sites for neutral lipids. Under normal growth conditions, they are not required in the yeast Saccharomyces cerevisiae . However, recent works have shown...
View articletitled, Amino acid starvation inhibits autophagy in lipid droplet-deficient cells through mitochondrial dysfunction
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Includes: Supplementary data
Articles

Engineering Arabidopsis long-chain acyl-CoA synthetase 9 variants with enhanced enzyme activity

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Yang Xu, Kristian Mark P. Caldo, Roman Holic, Elzbieta Mietkiewska, Jocelyn Ozga, Syed Masood Rizvi, Guanqun Chen, Randall J. Weselake
Journal: Biochemical Journal
Biochem J (2019) 476 (1): 151–164.
https://doi.org/10.1042/BCJ20180787
Published: 15 January 2019
.... Weselake ( [email protected] ) 1 10 2018 11 12 2018 17 12 2018 17 12 2018 Arabidopsis thaliana error-prone PCR LACS protein engineering Saccharomyces cerevisiae Fatty acids are carboxylic acids with highly reduced acyl chains, which act as the major...
View articletitled, Engineering Arabidopsis long-chain acyl-CoA synthetase 9 variants with enhanced enzyme activity
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Includes: Supplementary data
Articles

A copper transcription factor, AfMac1, regulates both iron and copper homeostasis in the opportunistic fungal pathogen Aspergillus fumigatus

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Yong-Sung Park, Suzie Kang, Hyewon Seo, Cheol-Won Yun
Journal: Biochemical Journal
Biochem J (2018) 475 (17): 2831–2845.
https://doi.org/10.1042/BCJ20180399
Published: 11 September 2018
...: Cheol-Won Yun ( [email protected] ) AfMac1 A. fumigatus copper iron Saccharomyces cerevisiae Copper and iron are essential cofactors in various enzymatic processes, such as oxidative phosphorylation, nucleotide biosynthesis, and the detoxification of reactive oxidative species...
View articletitled, A copper transcription factor, AfMac1, regulates both iron and copper homeostasis in the opportunistic fungal pathogen Aspergillus fumigatus
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Includes: Supplementary data
Articles

Toxicity of dihydroxyacetone is exerted through the formation of methylglyoxal in Saccharomyces cerevisiae : effects on actin polarity and nuclear division

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Wataru Nomura, Miho Aoki, Yoshiharu Inoue
Journal: Biochemical Journal
Biochem J (2018) 475 (16): 2637–2652.
https://doi.org/10.1042/BCJ20180234
Published: 29 August 2018
...Wataru Nomura; Miho Aoki; Yoshiharu Inoue Dihydroxyacetone (DHA) is the smallest ketotriose, and it is utilized by many organisms as an energy source. However, at higher concentrations, DHA becomes toxic towards several organisms including the budding yeast Saccharomyces cerevisiae . In the present...
View articletitled, Toxicity of dihydroxyacetone is exerted through the formation of methylglyoxal in Saccharomyces cerevisiae : effects on actin polarity and nuclear division
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Includes: Supplementary data
Articles

Substrate preferences of long-chain acyl-CoA synthetase and diacylglycerol acyltransferase contribute to enrichment of flax seed oil with α-linolenic acid

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Yang Xu, Roman Holic, Darren Li, Xue Pan, Elzbieta Mietkiewska, Guanqun Chen, Jocelyn Ozga, Randall J. Weselake
Journal: Biochemical Journal
Biochem J (2018) 475 (8): 1473–1489.
https://doi.org/10.1042/BCJ20170910
Published: 30 April 2018
... to form acyl-CoA, which in turn may serve as an acyl-donor in the DGAT-catalyzed reaction leading to TAG. To test this hypothesis, flax LACS and DGAT cDNAs were functionally expressed in Saccharomyces cerevisiae strains to probe their possible involvement in the enrichment of TAG with ALA. Among...
View articletitled, Substrate preferences of long-chain acyl-CoA synthetase and diacylglycerol acyltransferase contribute to enrichment of flax seed oil with α-linolenic acid
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Includes: Supplementary data
Articles

Human TorsinA can function in the yeast cytosol as a molecular chaperone

Open Access
Ilectra Adam, Lyne Jossé, Mick F. Tuite
Journal: Biochemical Journal
Biochem J (2017) 474 (20): 3439–3454.
https://doi.org/10.1042/BCJ20170395
Published: 05 October 2017
... of TorA, the biological function of TorA remains to be established. Here, we use the yeast Saccharomyces cerevisiae as a tractable in vivo model to explore TorA function. We demonstrate that TorA can protect yeast cells against different forms of environmental stress and show that in the absence...
View articletitled, Human TorsinA can function in the yeast cytosol as a molecular chaperone
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Includes: Supplementary data
Articles

Identification of residues critical for proton-coupled glutathione translocation in the yeast glutathione transporter, Hgt1p

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Mohammad Zulkifli, Anand Kumar Bachhawat
Journal: Biochemical Journal
Biochem J (2017) 474 (11): 1807–1821.
https://doi.org/10.1042/BCJ20161063
Published: 16 May 2017
... Society 2017 oligopeptide transporter family Saccharomyces cerevisiae site-directed mutagenesis transmembrane proteins transport Western blot analysis using crude cell preparation was carried out as described previously [ 9 , 25 ]. To quantify the protein expression levels in different...
View articletitled, Identification of residues critical for proton-coupled glutathione translocation in the yeast glutathione transporter, Hgt1p
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Articles

Modulation of the specific glutathionylation of mitochondrial proteins in the yeast Saccharomyces cerevisiae under basal and stress conditions

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Rachel Gergondey, Camille Garcia, Christophe H. Marchand, Stephane D. Lemaire, Jean-Michel Camadro, Françoise Auchère
Journal: Biochemical Journal
Biochem J (2017) 474 (7): 1175–1193.
https://doi.org/10.1042/BCJ20160927
Published: 15 March 2017
... of glutathionylated proteins in the yeast Saccharomyces cerevisiae and present a detailed proteomic analysis of the targets of protein glutathionylation in cells undergoing constitutive metabolism and after exposure to various stress conditions. This work establishes the physiological importance...
View articletitled, Modulation of the specific glutathionylation of mitochondrial proteins in the yeast Saccharomyces cerevisiae under basal and stress conditions
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Includes: Supplementary data
Articles

Metal-based superoxide dismutase and catalase mimics reduce oxidative stress biomarkers and extend life span of Saccharomyces cerevisiae

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Thales de P. Ribeiro, Fernanda L. Fonseca, Mariana D.C. de Carvalho, Rodrigo M. da C. Godinho, Fernando Pereira de Almeida, Tatiana D. Saint'Pierre, Nicolás A. Rey, Christiane Fernandes, Adolfo Horn, Jr, Marcos D. Pereira
Journal: Biochemical Journal
Biochem J (2017) 474 (2): 301–315.
https://doi.org/10.1042/BCJ20160480
Published: 06 January 2017
... that three metal-based compounds {[Fe(HPClNOL)Cl 2 ]NO 3 , [Cu(HPClNOL)(CH 3 CN)](ClO 4 ) 2 and Mn(HPClNOL)(Cl) 2 }, harboring in vitro SOD and/or CAT activities, were critical for protection of yeast cells against oxidative stress. In this work, treating Saccharomyces cerevisiae with these SOD/CAT mimics...
View articletitled, Metal-based superoxide dismutase and catalase mimics reduce oxidative stress biomarkers and extend life span of Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

The Rim101 pathway contributes to ER stress adaptation through sensing the state of plasma membrane

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Keisuke Obara, Akio Kihara
Journal: Biochemical Journal
Biochem J (2017) 474 (1): 51–63.
https://doi.org/10.1042/BCJ20160580
Published: 22 December 2016
... stress. Correspondence: Akio Kihara ( [email protected] ) contact site ER stress lipid asymmetry plasma membrane Rim101 pathway Saccharomyces cerevisiae Living organisms must respond appropriately to environmental changes. For instance, fungi that grow over a wide pH range...
View articletitled, The Rim101 pathway contributes to ER stress adaptation through sensing the state of plasma membrane
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Articles

Hot1 factor recruits co-activator Sub1 and elongation complex Spt4/5 to osmostress genes

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M. Gomar-Alba, M. del Olmo
Journal: Biochemical Journal
Biochem J (2016) 473 (19): 3065–3079.
https://doi.org/10.1042/BCJ20160463
Published: 27 September 2016
... Saccharomyces cerevisiae Spt4/5 Sub1 tandem affinity purification transcription Changes in the extracellular environment force microorganisms to develop mechanisms of adaptation and survival. Under high osmolarity conditions, the synthesis and retention of compatible osmolyte glycerol is essential...
View articletitled, Hot1 factor recruits co-activator Sub1 and elongation complex Spt4/5 to osmostress genes
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Includes: Supplementary data
Articles

Substrate specificity and mapping of residues critical for transport in the high-affinity glutathione transporter Hgt1p

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Mohammad Zulkifli, Shambhu Yadav, Anil Thakur, Shiffalli Singla, Monika Sharma, Anand Kumar Bachhawat
Journal: Biochemical Journal
Biochem J (2016) 473 (15): 2369–2382.
https://doi.org/10.1042/BCJ20160231
Published: 28 July 2016
...Mohammad Zulkifli; Shambhu Yadav; Anil Thakur; Shiffalli Singla; Monika Sharma; Anand Kumar Bachhawat The high-affinity glutathione transporter Hgt1p of Saccharomyces cerevisiae belongs to a relatively new and structurally uncharacterized oligopeptide transporter (OPT) family. To understand...
View articletitled, Substrate specificity and mapping of residues critical for transport in the high-affinity glutathione transporter Hgt1p
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Includes: Supplementary data
Articles

Identification of ferrichrome- and ferrioxamine B-mediated iron uptake by Aspergillus fumigatus

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Yong-Sung Park, Ju-Yeon Kim, Cheol-Won Yun
Journal: Biochemical Journal
Biochem J (2016) 473 (9): 1203–1213.
https://doi.org/10.1042/BCJ20160066
Published: 26 April 2016
... are putative virulence factors of A. fumigatus ; sit1 and sit2 are homologous to yeast Sit1, and sit1 and sit2 gene expression was up-regulated after iron depletion. When expressed heterologously in Saccharomyces cerevisiae , sit1 and sit2 were localized to the plasma membrane ; sit1 efficiently complemented...
View articletitled, Identification of ferrichrome- and ferrioxamine B-mediated iron uptake by Aspergillus fumigatus
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Includes: Supplementary data
Articles

Gcn1 contacts the small ribosomal protein Rps10, which is required for full activation of the protein kinase Gcn2

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Su Jung Lee, Mark J. Swanson, Evelyn Sattlegger
Journal: Biochemical Journal
Biochem J (2015) 466 (3): 547–559.
https://doi.org/10.1042/BJ20140782
Published: 06 March 2015
...), an essential process for overcoming starvation. In Saccharomyces cerevisiae , sensing amino acid shortages requires that Gcn2 binds directly to its effector protein Gcn1 and both must associate with the ribosome. Our hypothesis is that uncharged tRNAs occur in the ribosomal A-site and that Gcn1 is directly...
View articletitled, Gcn1 contacts the small ribosomal protein Rps10, which is required for full activation of the protein kinase Gcn2
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Articles

Trehalose-6-phosphate synthase 1 is not the only active TPS in Arabidopsis thaliana

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Ines Delorge, Carlos M. Figueroa, Regina Feil, John E. Lunn, Patrick Van Dijck
Journal: Biochemical Journal
Biochem J (2015) 466 (2): 283–290.
https://doi.org/10.1042/BJ20141322
Published: 20 February 2015
... that synthesis of trehalose-6-phosphate might not be the only mechanism by which AtTPS1 affects plant growth and development. Arabidopsis thaliana Saccharomyces cerevisiae trehalose trehalose phosphatase (TPP) trehalose 6-phosphate trehalose-6-phosphate synthase (TPS) Trehalose is a non...
View articletitled, Trehalose-6-phosphate synthase 1 is not the only active TPS in Arabidopsis thaliana
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Regulation of PKA activity by an autophosphorylation mechanism in Saccharomyces cerevisiae

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Clara Andrea Solari, Vanesa Tudisca, Marcelo Pugliessi, Alejandro Daniel Nadra, Silvia Moreno, Paula Portela
Journal: Biochemical Journal
Biochem J (2014) 462 (3): 567–579.
https://doi.org/10.1042/BJ20140577
Published: 22 August 2014
...Clara Andrea Solari; Vanesa Tudisca; Marcelo Pugliessi; Alejandro Daniel Nadra; Silvia Moreno; Paula Portela PKA (cAMP-dependent protein kinase) activity, as well as that of other AGC members, is regulated by multiple phosphorylations of its catalytic subunits. In Saccharomyces cerevisiae , the PKA...
View articletitled, Regulation of PKA activity by an autophosphorylation mechanism in Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

Reversible disassembly of the yeast V-ATPase revisited under in vivo conditions

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Katharina Tabke, Andrea Albertmelcher, Olga Vitavska, Markus Huss, Hans-Peter Schmitz, Helmut Wieczorek
Journal: Biochemical Journal
Biochem J (2014) 462 (1): 185–197.
https://doi.org/10.1042/BJ20131293
Published: 24 July 2014
... membrane-bound proton-translocating V o complex. This nutrient-dependent phenomenon had been first detected in the midgut epithelium of non-feeding moulting tobacco hornworms ( Manduca sexta ) and in glucose-deprived yeast cells ( Saccharomyces cerevisiae ). Since reversible disassembly to date had been...
View articletitled, Reversible disassembly of the yeast V-ATPase revisited under in vivo conditions
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A novel protein, Pho92, has a conserved YTH domain and regulates phosphate metabolism by decreasing the mRNA stability of PHO4 in Saccharomyces cerevisiae

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Hyun-Jun Kang, Sook-Jin Jeong, Kyung-Nam Kim, In-Joon Baek, Miwha Chang, Chang-Min Kang, Yong-Sung Park, Cheol-Won Yun
Journal: Biochemical Journal
Biochem J (2014) 457 (3): 391–400.
https://doi.org/10.1042/BJ20130862
Published: 10 January 2014
...Hyun-Jun Kang; Sook-Jin Jeong; Kyung-Nam Kim; In-Joon Baek; Miwha Chang; Chang-Min Kang; Yong-Sung Park; Cheol-Won Yun The homologue of human YTHDF2 , Ydr374c (Pho92), is the only protein that has a YTH (YT521-B homology) domain in Saccharomyces cerevisiae . Based on microarray analysis, genes...
View articletitled, A novel protein, Pho92, has a conserved YTH domain and regulates phosphate metabolism by decreasing the mRNA stability of PHO4 in Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

The transport of carboxylic acids and important role of the Jen1p transporter during the development of yeast colonies

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Sandra Paiva, Dita Strachotová, Helena Kučerová, Otakar Hlaváček, Sandra Mota, Margarida Casal, Zdena Palková, Libuše Váchová
Journal: Biochemical Journal
Biochem J (2013) 454 (3): 551–558.
https://doi.org/10.1042/BJ20120312
Published: 29 August 2013
... the experiment. The amount of ammonia in each sample was determined using the Nessler reagent. ammonia production Jen1p protein monocarboxylic acid import Saccharomyces cerevisiae yeast colony development Yeast colonies growing on solid medium periodically acidify and alkalize...
View articletitled, The transport of carboxylic acids and important role of the Jen1p transporter during the development of yeast colonies
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Articles

The activation loop of PKA catalytic isoforms is differentially phosphorylated by Pkh protein kinases in Saccharomyces cerevisiae

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Steven Haesendonckx, Vanesa Tudisca, Karin Voordeckers, Silvia Moreno, Johan M. Thevelein, Paula Portela
Journal: Biochemical Journal
Biochem J (2012) 448 (3): 307–320.
https://doi.org/10.1042/BJ20121061
Published: 21 November 2012
... of the PKA catalytic subunits on to the PIF (PDK1-interacting fragment) pocket of PDK1 is a critical step in this activation process. However, PDK1 regulation of PKA in vivo remains controversial. Saccharomyces cerevisiae contains three PKA catalytic subunits, TPK1 , TPK2 and TPK3 . We demonstrate that Pkh...
View articletitled, The activation loop of PKA catalytic isoforms is differentially phosphorylated by Pkh protein kinases in Saccharomyces cerevisiae
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Includes: Supplementary data
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Acidic stress induces the formation of P-bodies, but not stress granules, with mild attenuation of bulk translation in Saccharomyces cerevisiae

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Aya Iwaki, Shingo Izawa
Journal: Biochemical Journal
Biochem J (2012) 446 (2): 225–233.
https://doi.org/10.1042/BJ20120583
Published: 14 August 2012
... granules). We examined effects of acidic stress on the formation of mRNP granules compared with other forms of stress such as glucose deprivation and a high Ca 2+ level in Saccharomyces cerevisiae . Treatment with lactic acid clearly caused the formation of P-bodies, but not SGs, and also caused...
View articletitled, Acidic stress induces the formation of P-bodies, but not stress granules, with mild attenuation of bulk translation in Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

Mutational analysis of putative phosphate- and proton-binding sites in the Saccharomyces cerevisiae Pho84 phosphate:H + transceptor and its effect on signalling to the PKA and PHO pathways

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Dieter R. Samyn, Lorena Ruiz-Pávon, Michael R. Andersson, Yulia Popova, Johan M. Thevelein, Bengt L. Persson
Journal: Biochemical Journal
Biochem J (2012) 445 (3): 413–422.
https://doi.org/10.1042/BJ20112086
Published: 13 July 2012
...Dieter R. Samyn; Lorena Ruiz-Pávon; Michael R. Andersson; Yulia Popova; Johan M. Thevelein; Bengt L. Persson In Saccharomyces cerevisiae , the Pho84 phosphate transporter acts as the main provider of phosphate to the cell using a proton symport mechanism, but also mediates rapid activation...
View articletitled, Mutational analysis of putative phosphate- and proton-binding sites in the Saccharomyces cerevisiae Pho84 phosphate:H + transceptor and its effect on signalling to the PKA and PHO pathways
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Includes: Supplementary data
Articles

Role of individual phosphorylation sites for the 14-3-3-protein-dependent activation of yeast neutral trehalase Nth1

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Dana Veisova, Eva Macakova, Lenka Rezabkova, Miroslav Sulc, Petr Vacha, Hana Sychrova, Tomas Obsil, Veronika Obsilova
Journal: Biochemical Journal
Biochem J (2012) 443 (3): 663–670.
https://doi.org/10.1042/BJ20111615
Published: 16 April 2012
... between Saccharomyces cerevisiae Nth1 and 14-3-3 protein isoforms Bmh1 and Bmh2. We determined four residues that are phosphorylated by PKA (protein kinase A) in vitro within the disordered N-terminal segment of Nth1. Sedimentation analysis and enzyme kinetics measurements show that both yeast 14-3-3...
View articletitled, Role of individual phosphorylation sites for the 14-3-3-protein-dependent activation of yeast neutral trehalase Nth1
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Includes: Supplementary data
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Functional mapping of the disparate activities of the yeast moonlighting protein Hal3

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J. Albert Abrie, Asier González, Erick Strauss, Joaquín Ariño
Journal: Biochemical Journal
Biochem J (2012) 442 (2): 357–368.
https://doi.org/10.1042/BJ20111466
Published: 13 February 2012
...J. Albert Abrie; Asier González; Erick Strauss; Joaquín Ariño The Saccharomyces cerevisiae Hal3 protein is a moonlighting protein, able to function both as an inhibitory subunit of the Ppz1 protein phosphatase and as a constituent protomer of an unprecedented heterotrimeric PPCDC...
View articletitled, Functional mapping of the disparate activities of the yeast moonlighting protein Hal3
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Includes: Supplementary data
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Directed evolution of a temperature-, peroxide- and alkaline pH-tolerant versatile peroxidase

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Eva Garcia-Ruiz, David Gonzalez-Perez, Francisco J. Ruiz-Dueñas, Angel T. Martínez, Miguel Alcalde
Journal: Biochemical Journal
Biochem J (2012) 441 (1): 487–498.
https://doi.org/10.1042/BJ20111199
Published: 14 December 2011
... to six rounds of directed evolution, achieving a level of secretion in Saccharomyces cerevisiae (21 mg/l) as yet unseen for any ligninolytic peroxidase. The evolved variant for expression harboured four mutations and increased its total VP activity 129-fold. The signal leader processing by the STE13...
View articletitled, Directed evolution of a temperature-, peroxide- and alkaline pH-tolerant versatile peroxidase
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A novel role for protein kinase Gcn2 in yeast tolerance to intracellular acid stress

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Guillem Hueso, Rafael Aparicio-Sanchis, Consuelo Montesinos, Silvia Lorenz, José R. Murguía, Ramón Serrano
Journal: Biochemical Journal
Biochem J (2012) 441 (1): 255–264.
https://doi.org/10.1042/BJ20111264
Published: 14 December 2011
.... 1 To whom correspondence should be addressed (email [email protected] ). 14 7 2011 12 9 2011 15 9 2011 15 9 2011 © The Authors Journal compilation © 2012 Biochemical Society 2012 pH homoeostasis signal transduction Gcn2 Saccharomyces cerevisiae amino...
View articletitled, A novel role for protein kinase Gcn2 in yeast tolerance to intracellular acid stress
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Articles

The yeast ABC transporter Pdr18 (ORF YNR070w ) controls plasma membrane sterol composition, playing a role in multidrug resistance

Open Access
Tânia R. Cabrito, Miguel C. Teixeira, Ashutosh Singh, Rajendra Prasad, Isabel Sá-Correia
Journal: Biochemical Journal
Biochem J (2011) 440 (2): 195–202.
https://doi.org/10.1042/BJ20110876
Published: 14 November 2011
... use, distribution and reproduction in any medium, provided the original work is properly cited. ergosterol homoeostasis herbicide resistance multidrug resistance pleiotropic drug resistance Saccharomyces cerevisiae In recent years, a physiological role for many of these transporters...
View articletitled, The yeast ABC transporter Pdr18 (ORF YNR070w ) controls plasma membrane sterol composition, playing a role in multidrug resistance
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Articles

The role of the protein kinase A pathway in the response to alkaline pH stress in yeast

Open Access
Carlos Casado, Asier González, Maria Platara, Amparo Ruiz, Joaquín Ariño
Journal: Biochemical Journal
Biochem J (2011) 438 (3): 523–533.
https://doi.org/10.1042/BJ20110607
Published: 26 August 2011
...Carlos Casado; Asier González; Maria Platara; Amparo Ruiz; Joaquín Ariño Exposure of Saccharomyces cerevisiae to alkaline pH provokes a stress condition that generates a compensatory reaction. In the present study we examined a possible role for the PKA (protein kinase A) pathway in this response...
View articletitled, The role of the protein kinase A pathway in the response to alkaline pH stress in yeast
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A plant proton-pumping inorganic pyrophosphatase functionally complements the vacuolar ATPase transport activity and confers bafilomycin resistance in yeast

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José R. Pérez-Castiñeira, Agustín Hernández, Rocío Drake, Aurelio Serrano
Journal: Biochemical Journal
Biochem J (2011) 437 (2): 269–278.
https://doi.org/10.1042/BJ20110447
Published: 28 June 2011
.... chimaeric membrane protein green fluorescent protein heterologous expression proton-translocating inorganic pyrophosphatase Saccharomyces cerevisiae vacuolar-type ATPase © The Authors Journal compilation © 2011 Biochemical Society 2011 10 3 2011 3 5 2011 5 5 2011 26 5...
View articletitled, A plant proton-pumping inorganic pyrophosphatase functionally complements the vacuolar ATPase transport activity and confers bafilomycin resistance in yeast
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Includes: Supplementary data
Articles

Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae

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Wen Zhang, Jiahai Zhang, Xuecheng Zhang, Chao Xu, Xiaoming Tu
Journal: Biochemical Journal
Biochem J (2011) 436 (1): 83–90.
https://doi.org/10.1042/BJ20110004
Published: 27 April 2011
... together, this implies that Taf14 is involved in transcriptional activation of Saccharomyces cerevisiae and the YEATS domain of Taf14 might play a negative role in cell growth. All NMR data were collected at 298 K on a Bruker DMX500 spectrometer. A set of standard triple-resonance spectra was recorded...
View articletitled, Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

Transcriptional regulation of the Zrg17 zinc transporter of the yeast secretory pathway

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Yi-Hsuan Wu, Avery G. Frey, David J. Eide
Journal: Biochemical Journal
Biochem J (2011) 435 (1): 259–266.
https://doi.org/10.1042/BJ20102003
Published: 15 March 2011
...Yi-Hsuan Wu; Avery G. Frey; David J. Eide The Msc2 and Zrg17 proteins of Saccharomyces cerevisiae are members of the cation diffusion facilitator family of zinc transporters. These proteins form heteromeric complexes that transport zinc into the ER (endoplasmic reticulum). Previous studies...
View articletitled, Transcriptional regulation of the Zrg17 zinc transporter of the yeast secretory pathway
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Articles

The phosphoinositide 3-kinase Vps34p is required for pexophagy in Saccharomyces cerevisiae

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Silke Grunau, Dorothee Lay, Sabrina Mindthoff, Harald W. Platta, Wolfgang Girzalsky, Wilhelm W. Just, Ralf Erdmann
Journal: Biochemical Journal
Biochem J (2011) 434 (1): 161–170.
https://doi.org/10.1042/BJ20101115
Published: 27 January 2011
... discovered a PtdIns3 P -synthesizing activity in peroxisomes of Saccharomyces cerevisiae and have demonstrated that the lipid kinase Vps34p is already associated with peroxisomes during biogenesis. However, although Vps34 is required, it is not essential for optimal peroxisome biogenesis. The function...
View articletitled, The phosphoinositide 3-kinase Vps34p is required for pexophagy in Saccharomyces cerevisiae
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Lack of DNA helicase Pif1 disrupts zinc and iron homoeostasis in yeast

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María Guirola, Lina Barreto, Ayelen Pagani, Miriam Romagosa, Antonio Casamayor, Silvia Atrian, Joaquín Ariño
Journal: Biochemical Journal
Biochem J (2010) 432 (3): 595–608.
https://doi.org/10.1042/BJ20101032
Published: 25 November 2010
...María Guirola; Lina Barreto; Ayelen Pagani; Miriam Romagosa; Antonio Casamayor; Silvia Atrian; Joaquín Ariño The Saccharomyces cerevisiae gene PIF1 encodes a conserved eukaryotic DNA helicase required for both mitochondrial and nuclear DNA integrity. Our previous work revealed that a pif1 Δ strain...
View articletitled, Lack of DNA helicase Pif1 disrupts zinc and iron homoeostasis in yeast
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Includes: Supplementary data
Articles

Structural insights into the catalytic mechanism of the yeast pyridoxal 5-phosphate synthase Snz1

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Xuan Zhang, Yan-Bin Teng, Jian-Ping Liu, Yong-Xing He, Kang Zhou, Yuxing Chen, Cong-Zhao Zhou
Journal: Biochemical Journal
Biochem J (2010) 432 (3): 445–454.
https://doi.org/10.1042/BJ20101241
Published: 25 November 2010
... pyridoxal 5-phosphate synthase Saccharomyces cerevisiae site-directed mutagenesis The active form of vitamin B6, PLP (pyridoxal 5-phosphate), is an essential cofactor for numerous metabolic enzymes. PLP also has an important role in amino acid and carbohydrate metabolism [ 1 , 2 ]. To date, two...
View articletitled, Structural insights into the catalytic mechanism of the yeast pyridoxal 5-phosphate synthase Snz1
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Includes: Supplementary data
Articles

Cadmium regulates copper homoeostasis by inhibiting the activity of Mac1, a transcriptional activator of the copper regulon, in Saccharomyces cerevisiae

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Dong-Hyuk Heo, In-Joon Baek, Hyun-Jun Kang, Ji-Hyun Kim, Miwha Chang, Mi-Young Jeong, Tae-Hyoung Kim, Il-Dong Choi, Cheol-Won Yun
Journal: Biochemical Journal
Biochem J (2010) 431 (2): 257–265.
https://doi.org/10.1042/BJ20100638
Published: 28 September 2010
...Dong-Hyuk Heo; In-Joon Baek; Hyun-Jun Kang; Ji-Hyun Kim; Miwha Chang; Mi-Young Jeong; Tae-Hyoung Kim; Il-Dong Choi; Cheol-Won Yun Cadmium is a toxic metal and the mechanism of its toxicity has been studied in various model systems from bacteria to mammals. We employed Saccharomyces cerevisiae...
View articletitled, Cadmium regulates copper homoeostasis by inhibiting the activity of Mac1, a transcriptional activator of the copper regulon, in Saccharomyces cerevisiae
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Articles

Sphingolipids mediate formation of mRNA processing bodies during the heat-stress response of Saccharomyces cerevisiae

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L. Ashley Cowart, Jason L. Gandy, Baby Tholanikunnel, Yusuf A. Hannun
Journal: Biochemical Journal
Biochem J (2010) 431 (1): 31–38.
https://doi.org/10.1042/BJ20100307
Published: 14 September 2010
...L. Ashley Cowart; Jason L. Gandy; Baby Tholanikunnel; Yusuf A. Hannun Recent work, especially in the yeast Saccharomyces cerevisiae , has demonstrated that mRNA movement from active translation to cytoplasmic granules, termed mRNA‘p-bodies’ (processing bodies), occurs in concert with the regulation...
View articletitled, Sphingolipids mediate formation of mRNA processing bodies during the heat-stress response of Saccharomyces cerevisiae
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Articles

N-terminal chimaeras with signal sequences enhance the functional expression and alter the subcellular localization of heterologous membrane-bound inorganic pyrophosphatases in yeast

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Rocío Drake, Aurelio Serrano, José R. Pérez-Castiñeira
Journal: Biochemical Journal
Biochem J (2010) 426 (2): 147–157.
https://doi.org/10.1042/BJ20091491
Published: 09 February 2010
...Rocío Drake; Aurelio Serrano; José R. Pérez-Castiñeira Expression of heterologous multispanning membrane proteins in Saccharomyces cerevisiae is a difficult task. Quite often, the use of multicopy plasmids where the foreign gene is under the control of a strong promoter does not guarantee efficient...
View articletitled, N-terminal chimaeras with signal sequences enhance the functional expression and alter the subcellular localization of heterologous membrane-bound inorganic pyrophosphatases in yeast
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Includes: Supplementary data
Articles

Biochemical characterization, membrane association and identification of amino acids essential for the function of Alg11 from Saccharomyces cerevisiae , an α1,2-mannosyltransferase catalysing two sequential glycosylation steps in the formation of the lipid-linked core oligosaccharide

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Birgit Absmanner, Verena Schmeiser, Michael Kämpf, Ludwig Lehle
Journal: Biochemical Journal
Biochem J (2010) 426 (2): 205–217.
https://doi.org/10.1042/BJ20091121
Published: 09 February 2010
.... In the case of Δ alg11 the medium also contained, if not indicated otherwise, 0.5 M KCl. ALG11 dolichol lipid-linked oligosaccharide mannosyltransferase protein N-glycosylation Saccharomyces cerevisiae The pathway of N-linked protein glycosylation in eukaryotes is highly conserved...
View articletitled, Biochemical characterization, membrane association and identification of amino acids essential for the function of Alg11 from Saccharomyces cerevisiae , an α1,2-mannosyltransferase catalysing two sequential glycosylation steps in the formation of the lipid-linked core oligosaccharide
Open the PDF for Biochemical characterization, membrane association and identification of amino acids essential for the function of Alg11 from Saccharomyces cerevisiae , an α1,2-mannosyltransferase catalysing two sequential glycosylation steps in the formation of the lipid-linked core oligosaccharide in another window
Articles

Regulatory factors controlling transcription of Saccharomyces cerevisiae IXR1 by oxygen levels: a model of transcriptional adaptation from aerobiosis to hypoxia implicating ROX1 and IXR1 cross-regulation

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Raquel Castro-Prego, Mónica Lamas-Maceiras, Pilar Soengas, Isabel Carneiro, Isabel González-Siso, M. Esperanza Cerdán
Journal: Biochemical Journal
Biochem J (2010) 425 (1): 235–243.
https://doi.org/10.1042/BJ20091500
Published: 14 December 2009
...Raquel Castro-Prego; Mónica Lamas-Maceiras; Pilar Soengas; Isabel Carneiro; Isabel González-Siso; M. Esperanza Cerdán Ixr1p from Saccharomyces cerevisiae has been previously studied because it binds to DNA containing intrastrand cross-links formed by the anticancer drug cisplatin. Ixr1p is also...
View articletitled, Regulatory factors controlling transcription of Saccharomyces cerevisiae IXR1 by oxygen levels: a model of transcriptional adaptation from aerobiosis to hypoxia implicating ROX1 and IXR1 cross-regulation
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Articles

Conditions of endoplasmic reticulum stress stimulate lipid droplet formation in Saccharomyces cerevisiae

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Weihua Fei, Han Wang, Xin Fu, Christopher Bielby, Hongyuan Yang
Journal: Biochemical Journal
Biochem J (2009) 424 (1): 61–67.
https://doi.org/10.1042/BJ20090785
Published: 23 October 2009
... that conditions of ER (endoplasmic reticulum) stress stimulate LD formation in Saccharomyces cerevisiae . We found that LDs accumulated in yeast mutants with compromised protein glycosylation or ER-associated protein degradation. Moreover, tunicamycin and Brefeldin A, agents which induce ER stress, were found...
View articletitled, Conditions of endoplasmic reticulum stress stimulate lipid droplet formation in Saccharomyces cerevisiae
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Includes: Supplementary data
Articles

A novel function of Aft1 in regulating ferrioxamine B uptake: Aft1 modulates Arn3 ubiquitination in Saccharomyces cerevisiae

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Mi-Young Jeong, Chang-Min Kang, Ji-Hyun Kim, Dong-Hyuk Heo, Miwha Chang, In-Joon Baek, Hyeon-Su Ro, Il-Dong Choi, Tae-Hyoung Kim, Cheol-Won Yun
Journal: Biochemical Journal
Biochem J (2009) 422 (1): 181–191.
https://doi.org/10.1042/BJ20082399
Published: 29 July 2009
...Mi-Young Jeong; Chang-Min Kang; Ji-Hyun Kim; Dong-Hyuk Heo; Miwha Chang; In-Joon Baek; Hyeon-Su Ro; Il-Dong Choi; Tae-Hyoung Kim; Cheol-Won Yun Aft1 is a transcriptional activator in Saccharomyces cerevisiae that responds to iron availability and regulates the expression of genes in the iron...
View articletitled, A novel function of Aft1 in regulating ferrioxamine B uptake: Aft1 modulates Arn3 ubiquitination in Saccharomyces cerevisiae
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Articles

TVP23 interacts genetically with the yeast SNARE VTI1 and functions in retrograde transport from the early endosome to the late Golgi

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Ivar S. Stein, Anna Gottfried, Jana Zimmermann, Gabriele Fischer von Mollard
Journal: Biochemical Journal
Biochem J (2009) 419 (1): 229–236.
https://doi.org/10.1042/BJ20081973
Published: 13 March 2009
.... The SNARE Vti1p is required for several transport steps between late Golgi, endosomes and the vacuole in the yeast Saccharomyces cerevisiae . Here, we identified the late Golgi membrane protein TVP23 as a multicopy suppressor of the growth defect in vti1 - 2 cells. By contrast, the growth defect in vti1...
View articletitled, TVP23 interacts genetically with the yeast SNARE VTI1 and functions in retrograde transport from the early endosome to the late Golgi
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Articles

The splicing factor Prp17 interacts with the U2, U5 and U6 snRNPs and associates with the spliceosome pre- and post-catalysis

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Aparna K. Sapra, Piyush Khandelia, Usha Vijayraghavan
Journal: Biochemical Journal
Biochem J (2008) 416 (3): 365–374.
https://doi.org/10.1042/BJ20081195
Published: 26 November 2008
...Aparna K. Sapra; Piyush Khandelia; Usha Vijayraghavan Saccharomyces cerevisiae PRP17 -null mutants are temperature-sensitive for growth. In vitro splicing with extracts lacking Prp17 are kinetically slow for the first step of splicing and are arrested for the second step at temperatures greater...
View articletitled, The splicing factor Prp17 interacts with the U2, U5 and U6 snRNPs and associates with the spliceosome pre- and post-catalysis
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Includes: Supplementary data
Articles

Ypp1/YGR198w plays an essential role in phosphoinositide signalling at the plasma membrane

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Chao Zhai, Kuoyu Li, Valentini Markaki, John P. Phelan, Katherine Bowers, Frank T. Cooke, Barry Panaretou
Journal: Biochemical Journal
Biochem J (2008) 415 (3): 455–466.
https://doi.org/10.1042/BJ20080209
Published: 15 October 2008
... and signalling from the cell surface. A proteome-wide screen performed in Saccharomyces cerevisiae revealed that Ypp1 interacts physically with the plasma-membrane-associated phosphoinositide 4-kinase, Stt4. In the present study, we demonstrate that phenotypes of ypp1 and stt4 conditional mutants are identical...
View articletitled, Ypp1/YGR198w plays an essential role in phosphoinositide signalling at the plasma membrane
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Articles

Human pancreatic β-cell glucokinase: subcellular localization and glucose repression signalling function in the yeast cell

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Alberto Riera, Deifilia Ahuatzi, Pilar Herrero, Maria Adelaida Garcia-Gimeno, Pascual Sanz, Fernando Moreno
Journal: Biochemical Journal
Biochem J (2008) 415 (2): 233–239.
https://doi.org/10.1042/BJ20080797
Published: 25 September 2008
... (hexokinase 2) from Saccharomyces cerevisiae . In fact, it has been previously described that expression of GK β in yeast could replace Hxk2 in the glucose signalling pathway of S. cerevisiae . In the present study we report that GK β exerts its regulatory role by association with the yeast transcriptional...
View articletitled, Human pancreatic β-cell glucokinase: subcellular localization and glucose repression signalling function in the yeast cell
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Articles

Nucleosomes represent a physical barrier for cleavage activity of DNA topoisomerase I in vivo

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Francesca Di Felice, Francesco Chiani, Giorgio Camilloni
Journal: Biochemical Journal
Biochem J (2008) 409 (3): 651–656.
https://doi.org/10.1042/BJ20070893
Published: 15 January 2008
... topoisomerase I in the presence of camptothecin on a repeated trinucleotide sequence, (TTA) 35 , lying in chromosome XIII of Saccharomyces cerevisiae , we can conclude that nucleosomes represent a physical barrier for the enzyme activity. 1 To whom correspondence should be addressed (email...
View articletitled, Nucleosomes represent a physical barrier for cleavage activity of DNA topoisomerase I in vivo
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Articles

A novel zinc-dependent D-serine dehydratase from Saccharomyces cerevisiae

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Tomokazu Ito, Hisashi Hemmi, Kunishige Kataoka, Yukio Mukai, Tohru Yoshimura
Journal: Biochemical Journal
Biochem J (2008) 409 (2): 399–406.
https://doi.org/10.1042/BJ20070642
Published: 21 December 2007
...Tomokazu Ito; Hisashi Hemmi; Kunishige Kataoka; Yukio Mukai; Tohru Yoshimura YGL196W of Saccharomyces cerevisiae encodes a putative protein that is unidentified but is predicted to have a motif similar to that of the N-terminal domain of the bacterial alanine racemase. In the present study we found...
View articletitled, A novel zinc-dependent D-serine dehydratase from Saccharomyces cerevisiae
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Includes: Supplementary data