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Keywords: fluorescence resonance energy transfer (FRET)
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Articles

Non-preferential fuelling of the Na + /K + -ATPase pump

Ignacio Fernández-Moncada, L. Felipe Barros
Journal: Biochemical Journal
Biochem J (2014) 460 (3): 353–361.
https://doi.org/10.1042/BJ20140003
Published: 29 May 2014
... resonance energy transfer (FRET) glucose glycolytic ATP mitochondrial ATP Na + /K + -ATPase Na + homoeostasis and energy metabolism are tightly linked. Approximately 30% of the energy budget of the average mammalian cell is invested in Na + pumping. A number of studies performed in different...
View article titled, Non-preferential fuelling of the Na + /K + -ATPase pump
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Includes: Supplementary data
Articles

Phosphatidylserine and FVa regulate FXa structure

Kinshuk Raj Srivasatava, Rinku Majumder, William H. Kane, Mary Ann Quinn-Allen, Barry R. Lentz
Journal: Biochemical Journal
Biochem J (2014) 459 (1): 229–239.
https://doi.org/10.1042/BJ20131099
Published: 14 March 2014
... Å upon C6PS binding to the regulatory site and Factor Va binding to the catalytic site. conformational regulation Factor Va Factor Xa fluorescence resonance energy transfer (FRET) phosphatidylserine prothrombinase complex The prothrombinase complex plays a central role in blood...
View article titled, Phosphatidylserine and FVa regulate FXa structure
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Articles

Differential regulation of glucose transport activity in yeast by specific cAMP signatures

Clara Bermejo, Farzad Haerizadeh, Mayuri S. C. Sadoine, Diane Chermak, Wolf B. Frommer
Journal: Biochemical Journal
Biochem J (2013) 452 (3): 489–497.
https://doi.org/10.1042/BJ20121736
Published: 31 May 2013
... 15 3 2013 © The Authors Journal compilation © 2013 Biochemical Society 2013 cAMP fluorescence resonance energy transfer (FRET) glucose signalling starvation yeast Micro-organisms experience rapid and extreme changes in nutrient availability in their natural habitats...
View article titled, Differential regulation of glucose transport activity in yeast by specific cAMP signatures
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Includes: Supplementary data
Articles

Molecular orientation of Factor VIIIa on the phospholipid membrane surface determined by fluorescence resonance energy transfer

Hironao Wakabayashi, Philip J. Fay
Journal: Biochemical Journal
Biochem J (2013) 452 (2): 293–301.
https://doi.org/10.1042/BJ20130025
Published: 10 May 2013
... coagulation Factor VIII fluorescence resonance energy transfer (FRET) phospholipid membrane protein structure Membrane-binding regions have been identified in the C2 domain and include Leu 2251 –Leu 2252 , Met 2199 –Phe 2200 , Lys 2227 and Trp 2313 –His 2315 [ 7 – 10 ]. We reported previously...
View article titled, Molecular orientation of Factor VIIIa on the phospholipid membrane surface determined by fluorescence resonance energy transfer
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Articles

Generation and characterization of a lysosomally targeted, genetically encoded Ca 2+ -sensor

Hannah V. McCue, Joanna D. Wardyn, Robert D. Burgoyne, Lee P. Haynes
Journal: Biochemical Journal
Biochem J (2013) 449 (2): 449–457.
https://doi.org/10.1042/BJ20120898
Published: 14 December 2012
... is properly cited. cameleon calcium fluorescence resonance energy transfer (FRET) lysosome sensor signalling targeting Ca 2+ signalling is ubiquitous within animal cells and has an impact upon all aspects of normal cellular physiology to some degree [ 1 , 2 ]. The utility of the Ca 2...
View article titled, Generation and characterization of a lysosomally targeted, genetically encoded Ca 2+ -sensor
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Includes: Multimedia, Supplementary data
Articles

Dimerization of MT1-MMP during cellular invasion detected by fluorescence resonance energy transfer

Yoshifumi Itoh, Ralf Palmisano, Narayanapanicker Anilkumar, Hideaki Nagase, Atsushi Miyawaki, Motoharu Seiki
Journal: Biochemical Journal
Biochem J (2011) 440 (3): 319–327.
https://doi.org/10.1042/BJ20110424
Published: 28 November 2011
... extracellular matrix (ECM) fluorescence resonance energy transfer (FRET) membrane-type 1 matrix metalloproteinase (MT1-MMP) Cell migration is a dynamic process that requires orchestration of many different molecules. Cells attach to the ECM (extracellular matrix) scaffold through receptors...
View article titled, Dimerization of MT1-MMP during cellular invasion detected by fluorescence resonance energy transfer
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Includes: Multimedia, Supplementary data
Articles

Interaction between bacterial outer membrane proteins and periplasmic quality control factors: a kinetic partitioning mechanism

Si Wu, Xi Ge, Zhixin Lv, Zeyong Zhi, Zengyi Chang, Xin Sheng Zhao
Journal: Biochemical Journal
Biochem J (2011) 438 (3): 505–511.
https://doi.org/10.1042/BJ20110264
Published: 26 August 2011
[email protected] or [email protected] ). 10 2 2011 2 6 2011 14 6 2011 14 6 2011 © The Authors Journal compilation © 2011 Biochemical Society 2011 DegP fluorescence resonance energy transfer (FRET) outer membrane protein single-molecule detection Skp SurA...
View article titled, Interaction between bacterial outer membrane proteins and periplasmic quality control factors: a kinetic partitioning mechanism
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Articles

Movement of hClC-1 C-termini during common gating and limits on their cytoplasmic location

Linlin Ma, Grigori Y. Rychkov, Ekaterina A. Bykova, Jie Zheng, Allan H. Bretag
Journal: Biochemical Journal
Biochem J (2011) 436 (2): 415–428.
https://doi.org/10.1042/BJ20102153
Published: 13 May 2011
... Biochemical Society 2011 C-terminus common gating conformation change cytoplasmic domain human skeletal muscle chloride channel (hClC-1) fluorescence resonance energy transfer (FRET) Table 2 V 1/2 and k values determined from Boltzmann fits to open probability data...
View article titled, Movement of hClC-1 C-termini during common gating and limits on their cytoplasmic location
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Includes: Supplementary data
Articles

Denatured proteins facilitate the formation of the football-shaped GroEL–(GroES) 2 complex

Tomoya Sameshima, Ryo Iizuka, Taro Ueno, Takashi Funatsu
Journal: Biochemical Journal
Biochem J (2010) 427 (2): 247–254.
https://doi.org/10.1042/BJ20091845
Published: 29 March 2010
... and the concomitant association of ATP and the second GroES. © The Authors Journal compilation © 2010 Biochemical Society 2010 chaperonin denatured protein fluorescence resonance energy transfer (FRET) football-shaped complex GroEL GroES Chaperonins belong to a ubiquitous class of molecular...
View article titled, Denatured proteins facilitate the formation of the football-shaped GroEL–(GroES) 2 complex
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Includes: Supplementary data
Articles

Intermolecular cross-linking of monomers in Helicobacter pylori Na + /H + antiporter NhaA at the dimer interface inhibits antiporter activity

Akira Karasawa, Keiji Mitsui, Masafumi Matsushita, Hiroshi Kanazawa
Journal: Biochemical Journal
Biochem J (2010) 426 (1): 99–108.
https://doi.org/10.1042/BJ20091339
Published: 27 January 2010
... 2009 19 11 2009 19 11 2009 © The Authors Journal compilation © 2010 Biochemical Society 2010 Blue-native PAGE (BN-PAGE) cross-link dimerization fluorescence resonance energy transfer (FRET) Helicobacter pylori Na + /H + antiporter Na + /H + antiporters...
View article titled, Intermolecular cross-linking of monomers in Helicobacter pylori Na + /H + antiporter NhaA at the dimer interface inhibits antiporter activity
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Articles

GDI-1 preferably interacts with Rab10 in insulin-stimulated GLUT4 translocation

Yu Chen, Yongqiang Deng, Jinzhong Zhang, Lu Yang, Xiangyang Xie, Tao Xu
Journal: Biochemical Journal
Biochem J (2009) 422 (2): 229–235.
https://doi.org/10.1042/BJ20090624
Published: 13 August 2009
..., population averages are given as the means±S.E.M., and statistical significance was tested using the Student's t test. adipocytes fluorescence resonance energy transfer (FRET) guanine-nucleotide-dissociation inhibitor (GDI) glucose transporter 4 (GLUT4) Rab10 total internal reflection...
View article titled, GDI-1 preferably interacts with Rab10 in insulin-stimulated GLUT4 translocation
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Includes: Supplementary data
Articles

RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase: using fluorescence anisotropy to monitor RNAP assembly in vitro

Dina Grohmann, Angela Hirtreiter, Finn Werner
Journal: Biochemical Journal
Biochem J (2009) 421 (3): 339–343.
https://doi.org/10.1042/BJ20090782
Published: 15 July 2009
... 2009 2 6 2009 3 6 2009 3 6 2009 © The Authors Journal compilation © 2009 Biochemical Society 2009 archaeon fluorescence resonance energy transfer (FRET) RNA polymerase RPB4/7 RPB6 transcription RNAPs (DNA-dependent RNA polymerases) transcribe the genomes...
View article titled, RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase: using fluorescence anisotropy to monitor RNAP assembly in vitro
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Articles

Hetero-oligomerization of the P2Y 11 receptor with the P2Y 1 receptor controls the internalization and ligand selectivity of the P2Y 11 receptor

Denise Ecke, Theodor Hanck, Mohan E. Tulapurkar, Rainer Schäfer, Matthias Kassack, Rolf Stricker, Georg Reiser
Journal: Biochemical Journal
Biochem J (2008) 409 (1): 107–116.
https://doi.org/10.1042/BJ20070671
Published: 11 December 2007
... The Authors Journal compilation © 2008 Biochemical Society 2008 calcium rise endocytosis hetero-oligomerization fluorescence resonance energy transfer (FRET) purinergic receptor pull-down experiment The current position on GPCR (G-protein-coupled receptor) organization in the plasma...
View article titled, Hetero-oligomerization of the P2Y 11 receptor with the P2Y 1 receptor controls the internalization and ligand selectivity of the P2Y 11 receptor
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Includes: Supplementary data
Articles

FRET studies with Factor X mutants provide insight into the topography of the membrane-bound Factor X/Xa

Shabir H. Qureshi, Likui Yang, Subramanian Yegneswaran, Alireza R. Rezaie
Journal: Biochemical Journal
Biochem J (2007) 407 (3): 427–433.
https://doi.org/10.1042/BJ20070735
Published: 12 October 2007
... be addressed (email [email protected] ). 31 5 2007 28 6 2007 18 7 2007 18 7 2007 © 2007 Biochemical Society 2007 γ-carboxyglutamic acid epidermal growth factor (EGF) Factor Xa fluorescence resonance energy transfer (FRET) prothrombinase vitamin K fX (Factor X...
View article titled, FRET studies with Factor X mutants provide insight into the topography of the membrane-bound Factor X/Xa
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Articles

Design of fluorescence resonance energy transfer (FRET)-based cGMP indicators: a systematic approach

Michael Russwurm, Florian Mullershausen, Andreas Friebe, Ronald Jäger, Corina Russwurm, Doris Koesling
Journal: Biochemical Journal
Biochem J (2007) 407 (1): 69–77.
https://doi.org/10.1042/BJ20070348
Published: 12 September 2007
... biosensor cGMP-dependent protein kinase (cGK) fluorescence resonance energy transfer (FRET) phosphodiesterase (PDE) The second messenger cGMP is involved in a variety of physiological processes in mammals, especially in the nervous and vascular systems, including mediation of smooth-muscle...
View article titled, Design of <span class="search-highlight">fluorescence</span> <span class="search-highlight">resonance</span> <span class="search-highlight">energy</span> <span class="search-highlight">transfer</span> (<span class="search-highlight">FRET</span>)-based cGMP indicators: a systematic approach
Open the PDF for Design of <span class="search-highlight">fluorescence</span> <span class="search-highlight">resonance</span> <span class="search-highlight">energy</span> <span class="search-highlight">transfer</span> (<span class="search-highlight">FRET</span>)-based cGMP indicators: a systematic approach in another window
Includes: Multimedia, Supplementary data
Articles

Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging

Hui-wang Ai, J. Nathan Henderson, S. James Remington, Robert E. Campbell
Journal: Biochemical Journal
Biochem J (2006) 400 (3): 531–540.
https://doi.org/10.1042/BJ20060874
Published: 28 November 2006
... demonstrate, the high quantum yield of mTFP1 (0.85) makes it particularly suitable as a replacement for ECFP (enhanced CFP) or Cerulean as a FRET (fluorescence resonance energy transfer) donor to either a yellow or orange FP acceptor. Clavularia fluorescence imaging fluorescence resonance energy...
View article titled, Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging
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Articles

The von Hippel–Lindau tumour-suppressor protein interaction with protein kinase Cδ

Xavier Iturrioz, Joanne Durgan, Véronique Calleja, Banafshé Larijani, Heiwa Okuda, Richard Whelan, Peter J. Parker
Journal: Biochemical Journal
Biochem J (2006) 397 (1): 109–120.
https://doi.org/10.1042/BJ20060354
Published: 14 June 2006
.... fluorescence lifetime imaging microscopy (FLIM) fluorescence resonance energy transfer (FRET) protein complex protein kinase C (PKC) renal cell carcinoma (RCC) von Hippel–Lindau protein (pVHL) 1 Present address: INSERM U691-Collège de France, 11 place Marcelin Berthelot, 75231 Paris, France...
View article titled, The von Hippel–Lindau tumour-suppressor protein interaction with protein kinase Cδ
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Articles

Homologous versus heterologous interactions in the bicomponent staphylococcal γ-haemolysin pore 1

Gabriella Viero, Romina Cunaccia, Gilles Prévost, Sandra Werner, Henri Monteil, Daniel Keller, Olivier Joubert, Gianfranco Menestrina, Mauro Dalla Serra
Journal: Biochemical Journal
Biochem J (2006) 394 (1): 217–225.
https://doi.org/10.1042/BJ20051210
Published: 27 January 2006
... the addition of the toxins. 4 To whom correspondence should be addressed (email [email protected] ). 26 7 2005 19 9 2005 24 10 2005 24 10 2005 The Biochemical Society, London 2006 fluorescence resonance energy transfer (FRET) leucotoxin oligomerization pore-forming...
View article titled, Homologous versus heterologous interactions in the bicomponent staphylococcal γ-haemolysin pore 1
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Articles

Identification of the hydrophobic strand in the A–B loop of leptin as major binding site III: implications for large-scale preparation of potent recombinant human and ovine leptin antagonists

Leonora Niv-Spector, Dana Gonen-Berger, Isabelle Gourdou, Eva Biener, Eugene E. Gussakovsky, Yackir Benomar, Krishnan V. Ramanujan, Mohammed Taouis, Brian Herman, Isabelle Callebaut, Jean Djiane, Arieh Gertler
Journal: Biochemical Journal
Biochem J (2005) 391 (2): 221–230.
https://doi.org/10.1042/BJ20050457
Published: 10 October 2005
... resonance energy transfer (FRET) G-CSF granulocyte colony-stimulating factor h human HCA hydrophobic cluster analysis HEK-293T cells, human embryonic kidney 293T cells IBs inclusion bodies IL-6 interleukin-6 IGD immunoglobulin-like domain LBD leptin-binding...
View article titled, Identification of the hydrophobic strand in the A–B loop of leptin as major binding site III: implications for large-scale preparation of potent recombinant human and ovine leptin antagonists
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Includes: Supplementary data
Articles

Subcellular distribution of GABA B receptor homo- and hetero-dimers

Josée-France VILLEMURE, Lynda ADAM, Nicola J. BEVAN, Katy GEARING, Sébastien CHÉNIER, Michel BOUVIER
Journal: Biochemical Journal
Biochem J (2005) 388 (1): 47–55.
https://doi.org/10.1042/BJ20041435
Published: 10 May 2005
... in molecular and cell biology and a Canada Research Chair in signal transduction and molecular pharmacology. 20 8 2004 7 12 2004 23 12 2004 23 12 2004 The Biochemical Society, London 2005 bioluminescence resonance energy transfer (BRET) fluorescence resonance energy...
View article titled, Subcellular distribution of GABA B receptor homo- and hetero-dimers
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Articles

Monitoring the formation of dynamic G-protein-coupled receptor–protein complexes in living cells

Kevin D. G. PFLEGER, Karin A. EIDNE
Journal: Biochemical Journal
Biochem J (2005) 385 (3): 625–637.
https://doi.org/10.1042/BJ20041361
Published: 24 January 2005
...-throughput screening. Again, examples of studies utilizing time-resolved FRET are shown in Table 2 . arrestin bioluminescence resonance energy transfer (BRET) fluorescence resonance energy transfer (FRET) G-protein-coupled receptor (GPCR) oligomerization A great deal of information...
View article titled, Monitoring the formation of dynamic G-protein-coupled receptor–protein complexes in living cells
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Articles

Real-time imaging of myosin II regulatory light-chain phosphorylation using a new protein biosensor

Aki YAMADA, Kenzo HIROSE, Akiko HASHIMOTO, Masamitsu IINO
Journal: Biochemical Journal
Biochem J (2005) 385 (2): 589–594.
https://doi.org/10.1042/BJ20040778
Published: 07 January 2005
... The Biochemical Society, London 2005 fluorescence resonance energy transfer (FRET) green fluorescent protein (GFP) myosin phosphorylation protein biosensor Rho-kinase Myosin II plays important roles in regulating various cellular functions, including cytokinesis [ 1 ], migration [ 2...
View article titled, Real-time imaging of myosin II regulatory light-chain phosphorylation using a new protein biosensor
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Articles

Conserved extracellular cysteine residues and cytoplasmic loop–loop interplay are required for functionality of the heptahelical MLO protein

Candace ELLIOTT, Judith MÜLLER, Marco MIKLIS, Riyaz A. BHAT, Paul SCHULZE-LEFERT, Ralph PANSTRUGA
Journal: Biochemical Journal
Biochem J (2005) 385 (1): 243–254.
https://doi.org/10.1042/BJ20040993
Published: 14 December 2004
... fluorescence resonance energy transfer (FRET) intramolecular co-evolution MLO seven-transmembrane domain protein structure–function analysis The nucleotide sequence data reported for Physcomitrella patens PpMlo1 and Hordeum vulgare HvMlo3 will appear in DDBJ, EMBL, GenBank® and GSDB Nucleotide...
View article titled, Conserved extracellular cysteine residues and cytoplasmic loop–loop interplay are required for functionality of the heptahelical MLO protein
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Includes: Supplementary data
Articles

Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer

Satoshi KARASAWA, Toshio ARAKI, Takeharu NAGAI, Hideaki MIZUNO, Atsushi MIYAWAKI
Journal: Biochemical Journal
Biochem J (2004) 381 (1): 307–312.
https://doi.org/10.1042/BJ20040321
Published: 22 June 2004
.... The Biochemical Society, London 2004 donor/acceptor pair fluorescence resonance energy transfer (FRET) green fluorescent protein (GFP) green fluorescent protein (GFP)-like protein While spectral variant proteins with blue, cyan and yellow-green emissions have been generated from...
View article titled, Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer
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Articles

Monitoring conformational changes of proteins in cells by fluorescence lifetime imaging microscopy

Véronique CALLEJA, Simon M. AMEER-BEG, Borivoj VOJNOVIC, Rudiger WOSCHOLSKI, Julian DOWNWARD, Banafshé LARIJANI
Journal: Biochemical Journal
Biochem J (2003) 372 (1): 33–40.
https://doi.org/10.1042/bj20030358
Published: 15 May 2003
...-acceptor-fluorescence (EAF)-induced fluorescence resonance energy transfer (FRET). Additionally, a novel fusion partner, YFP dark , has been designed to act as a sterically hindered control for EAF-FRET. Any conformational changes will cause a variation in FRET, which, in turn, is detected by fluorescence...
View article titled, Monitoring conformational changes of proteins in cells by fluorescence lifetime imaging microscopy
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Articles

Protein conformation: through a lens, darkly

Robert INSALL
Journal: Biochemical Journal
Biochem J (2003) 372 (1): e1–e2.
https://doi.org/10.1042/bj20030358COM
Published: 15 May 2003
... AGC kinases enhanced acceptor fluorescence conformational change dark yellow fluorescent protein (YFP dark ) fluorescence resonance energy transfer (FRET) protein kinase B (PKB)/Akt Biochem. J. (2003) 372 (10.1042/BJ20030358COM) (Printed in Great Britain) COMMENTARY Protein conformation...
View article titled, Protein conformation: through a lens, darkly
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Articles

Nucleotide binding to human uncoupling protein-2 refolded from bacterial inclusion bodies

Mika B. JEKABSONS, Karim S. ECHTAY, Martin D. BRAND
Journal: Biochemical Journal
Biochem J (2002) 366 (2): 565–571.
https://doi.org/10.1042/bj20020469
Published: 01 September 2002
... 2002 27 5 2002 The Biochemical Society, London ©2002 2002 fluorescence resonance energy transfer (FRET) hydroxyapatite polyoxyethylene ether detergent UCP2 Abbreviations used: Dans, 5-(dimethylamino)naphthalene-1-sulphonyl; FRET, fluorescence resonance energy transfer; Mant...
View article titled, Nucleotide binding to human uncoupling protein-2 refolded from bacterial inclusion bodies
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