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1-7 of 7
Keywords: modelling
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Articles
Journal:
Biochemical Journal
Biochem J (2010) 431 (1): 63–72.
Published: 14 September 2010
.... This conformational variability of the TED/CUB domains would facilitate their interactions with a broad range of antigenic surfaces. The second dimerization of C3 and C3u may correspond to a dimer observed in one of the crystal structures of C3b. The five best-fit C3u models in 137 mM NaCl have been deposited...
Includes: Supplementary data
Articles
Journal:
Biochemical Journal
Biochem J (2007) 401 (2): 485–495.
Published: 21 December 2006
... illustrate a simple kinetic model of G-protein signalling. This model shows that stable production of significant amounts of free Gα GTP (GTP-bound Gα subunit) and βγ is only one of multiple modes of behaviour of the G-protein system upon activation. Other modes, previously uncharacterized, are sustained...
Includes: Supplementary data
Articles
Journal:
Biochemical Journal
Biochem J (2006) 393 (3): 669–678.
Published: 13 January 2006
... of the cardiac myocyte (sarcolemma). The mechanism underlying the sarcolemmal transport of FAs is incompletely understood. The aim of the present study was to estimate the trans-sarcolemmal FA uptake rate using a comprehensive computer model, in which the most relevant mechanisms proposed for cardiac FA uptake...
Articles
Journal:
Biochemical Journal
Biochem J (2006) 393 (2): e1.
Published: 23 December 2005
... substrates. Structural modelling based on Dengue virus NS3 provided a possible rationale for the observed cleavage specificity of West Nile virus NS3. The emerging zoonotic diseases that have seized headlines in papers around the world emphasize the importance of preparedness to face current outbreaks...
Articles
Judit Oláh, Ferenc Orosz, László G. Puskás, László Hackler, Jr, Margit Horányi, László Polgár, Susan Hollán, Judit Ovádi
Journal:
Biochemical Journal
Biochem J (2005) 392 (3): 675–683.
Published: 06 December 2005
... mutations (F240L and E145Stop), but only the younger one suffers from neurodegeneration. In the present study, we determined the kinetic parameters of key glycolytic enzymes including the mutant TPI for rational modelling of erythrocyte glycolysis. We found that a low TPI activity in the mutant cells (lower...
Includes: Supplementary data
Articles
Richard K. HUGHES, Stuart I. WEST, Andrzej R. HORNOSTAJ, David M. LAWSON, Shirley A. FAIRHURST, Raquel O. SANCHEZ, Paul HOUGH, Brian H. ROBINSON, Rod CASEY
Journal:
Biochemical Journal
Biochem J (2001) 353 (2): 345–355.
Published: 08 January 2001
.... We have used a homology model of pea 9/13-lipoxygenase to superimpose and compare the linoleate-binding pockets of different potato lipoxygenases of known positional specificity. We then tested this model by using site-directed mutagenesis to identify some primary determinants of linoleate binding...
Articles
Peter K. CHIANG, Margaret E. CHAMBERLIN, Diarmuid NICHOLSON, Sandrine SOUBES, Xin-zhuan SU, Gangadharan SUBRAMANIAN, David E. LANAR, Sean T. PRIGGE, John P. SCOVILL, Louis H. MILLER, Janice Y. CHOU
Journal:
Biochemical Journal
Biochem J (1999) 344 (2): 571–576.
Published: 24 November 1999
... of ADP, P i and metal ions are similarly preserved, matching entirely those of human hepatic SAMS and Escherichia coli SAMS. Molecular modelling of PfSAMS guided by the X-ray crystal structure of E. coli SAMS indicates that PfSAMS binds ATP/Mg 2+ in a manner similar to that seen in the E. coli SAMS...