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Articles

Using human disease mutations to understand de novo DNA methyltransferase function

Willow Rolls, Marcus D. Wilson, Duncan Sproul
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (5): 2059–2075.
https://doi.org/10.1042/BST20231017
Published: 24 October 2024
View article titled, Using human disease mutations to understand de novo DNA methyltransferase function
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Articles

Understanding the role of ten-eleven translocation family proteins in kidney diseases

Yuelin Zhang, Jiahui Li, Li Tan, Jun Xue, Yujiang Geno Shi
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (5): 2203–2214.
https://doi.org/10.1042/BST20240291
Published: 08 October 2024
View article titled, Understanding the role of ten-eleven translocation family proteins in kidney diseases
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Articles

Safeguarding genomic integrity in beta-cells: implications for beta-cell differentiation, growth, and dysfunction

Sneha S. Varghese, Alessandro Giovanni Hernandez-De La Peña, Sangeeta Dhawan
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (5): 2133–2144.
https://doi.org/10.1042/BST20231519
Published: 04 October 2024
View article titled, Safeguarding genomic integrity in beta-cells: implications for beta-cell differentiation, growth, and dysfunction
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Articles

Hetero-oligomeric interaction as a new regulatory mechanism for protein arginine methyltransferases

Angela A. Bae, Y. George Zheng
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (5): 2193–2201.
https://doi.org/10.1042/BST20240242
Published: 26 September 2024
View article titled, Hetero-oligomeric interaction as a new regulatory mechanism for protein arginine methyltransferases
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Articles

Histone H3 mutations and their impact on genome stability maintenance

Lucas D. Caeiro, Ramiro E. Verdun, Lluis Morey
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (5): 2179–2191.
https://doi.org/10.1042/BST20240177
Published: 09 September 2024
View article titled, Histone H3 mutations and their impact on genome stability maintenance
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Articles

How does CHD4 slide nucleosomes?

In Collection
Epigenetics
Xavier J. Reid, Yichen Zhong, Joel P. Mackay
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (5): 1995–2008.
https://doi.org/10.1042/BST20230070
Published: 02 September 2024
View article titled, How does CHD4 slide nucleosomes?
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Articles

Progress in multifactorial single-cell chromatin profiling methods

In Collection
Epigenetics
Tim Stuart
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (4): 1827–1839.
https://doi.org/10.1042/BST20231471
Published: 18 July 2024
View article titled, Progress in multifactorial single-cell chromatin profiling methods
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Articles

Nucleosomal asymmetry: a novel mechanism to regulate nucleosome function

In Collection
Epigenetics
Devisree Valsakumar, Philipp Voigt
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (3): 1219–1232.
https://doi.org/10.1042/BST20230877
Published: 23 May 2024
View article titled, Nucleosomal asymmetry: a novel mechanism to regulate nucleosome function
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Articles

Differential 3D genome architecture and imprinted gene expression: cause or consequence?

Benoit Moindrot, Yui Imaizumi, Robert Feil
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (3): 973–986.
https://doi.org/10.1042/BST20230143
Published: 22 May 2024
View article titled, Differential 3D genome architecture and imprinted gene expression: cause or consequence?
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Articles

Technology to the rescue: how to uncover the role of transposable elements in preimplantation development

In Collection
Epigenetics
Lauryn A. Deaville, Rebecca V. Berrens
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (3): 1349–1362.
https://doi.org/10.1042/BST20231262
Published: 16 May 2024
View article titled, Technology to the rescue: how to uncover the role of transposable elements in preimplantation development
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Articles

How does the Xist activator Rlim/Rnf12 regulate Xist expression?

Feng Wang, Poonam Mehta, Ingolf Bach
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (3): 1099–1107.
https://doi.org/10.1042/BST20230573
Published: 15 May 2024
View article titled, How does the Xist activator Rlim/Rnf12 regulate Xist expression?
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Articles

The choreography of chromatin in RNA polymerase III regulation

Maria Elize van Breugel, Alan Gerber, Fred van Leeuwen
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (3): 1173–1189.
https://doi.org/10.1042/BST20230770
Published: 26 April 2024
View article titled, The choreography of chromatin in RNA polymerase III regulation
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Articles

The SWI/SNF chromatin remodeling complex: a critical regulator of metabolism

Michael C. Church, Jerry L. Workman
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (3): 1327–1337.
https://doi.org/10.1042/BST20231141
Published: 26 April 2024
View article titled, The SWI/SNF chromatin remodeling complex: a critical regulator of metabolism
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Articles

RNA m 6 A modification, signals for degradation or stabilisation?

Guifeng Wei
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (2): 707–717.
https://doi.org/10.1042/BST20230574
Published: 17 April 2024
View article titled, RNA m 6 A modification, signals for degradation or stabilisation?
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Articles

Deconstructing cancer with precision genome editing

Grace A. Johnson, Samuel I. Gould, Francisco J. Sánchez-Rivera
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (2): 803–819.
https://doi.org/10.1042/BST20230984
Published: 17 April 2024
View article titled, Deconstructing cancer with precision genome editing
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Articles

Genome organization across scales: mechanistic insights from in vitro reconstitution studies

In Collection
Epigenetics
Elisa Oberbeckmann, A. Marieke Oudelaar
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (2): 793–802.
https://doi.org/10.1042/BST20230883
Published: 07 March 2024
View article titled, Genome organization across scales: mechanistic insights from in vitro reconstitution studies
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Articles

Bivalent chromatin: a developmental balancing act tipped in cancer

In Collection
Epigenetics
Eleanor Glancy, Natalie Choy, Melanie A. Eckersley-Maslin
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (1): 217–229.
https://doi.org/10.1042/BST20230426
Published: 22 February 2024
View article titled, Bivalent chromatin: a developmental balancing act tipped in cancer
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Articles

Cell-free genomics: transcription factor interactions in reconstituted naïve embryonic chromatin

In Collection
Epigenetics
Peter B. Becker
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (1): 423–429.
https://doi.org/10.1042/BST20230878
Published: 08 February 2024
View article titled, Cell-free genomics: transcription factor interactions in reconstituted naïve embryonic chromatin
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Articles

Polycomb-mediated histone modifications and gene regulation

In Collection
Epigenetics
Shinsuke Ito, Takashi Umehara, Haruhiko Koseki
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (1): 151–161.
https://doi.org/10.1042/BST20230336
Published: 30 January 2024
View article titled, Polycomb-mediated histone modifications and gene regulation
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Articles

Neurodevelopmental functions of CHD8: new insights and questions

M. Albert Basson
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (1): 15–27.
https://doi.org/10.1042/BST20220926
Published: 30 January 2024
View article titled, Neurodevelopmental functions of CHD8: new insights and questions
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Articles

Revealing chromatin-specific functions of histone deacylases

In Collection
Epigenetics
Carlos Moreno-Yruela, Beat Fierz
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (1): 353–365.
https://doi.org/10.1042/BST20230693
Published: 08 January 2024
View article titled, Revealing chromatin-specific functions of histone deacylases
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Articles

RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding

Kathleen E. Taylor, Lucas G. Miller, Lydia M. Contreras
Journal: Biochemical Society Transactions
Biochem Soc Trans (2024) 52 (1): 111–122.
https://doi.org/10.1042/BST20230254
Published: 04 January 2024
View article titled, RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding
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Articles

The MYBL1/TCFL5 transcription network: two collaborative factors with central role in male meiosis

Martin Säflund, Deniz M. Özata
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (6): 2163–2172.
https://doi.org/10.1042/BST20231007
Published: 28 November 2023
View article titled, The MYBL1/TCFL5 transcription network: two collaborative factors with central role in male meiosis
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Articles

Histone mutations in cancer

Kimberly N. Espinoza Pereira, Jixiu Shan, Jonathan D. Licht, Richard L. Bennett
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (5): 1749–1763.
https://doi.org/10.1042/BST20210567
Published: 18 September 2023
View article titled, Histone mutations in cancer
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Articles

Myosin in chromosome organisation and gene expression

Isabel W. Shahid-Fuente, Christopher P. Toseland
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (3): 1023–1034.
https://doi.org/10.1042/BST20220939
Published: 12 May 2023
View article titled, Myosin in chromosome organisation and gene expression
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Articles

Studying histone inheritance in different systems using imaging-based methods and perspectives

Emily Zion, Xin Chen
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (3): 1035–1046.
https://doi.org/10.1042/BST20220983
Published: 12 May 2023
View article titled, Studying histone inheritance in different systems using imaging-based methods and perspectives
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Articles

Effectors and effects of arginine methylation

Yalong Wang, Mark T. Bedford
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (2): 725–734.
https://doi.org/10.1042/BST20221147
Published: 04 April 2023
View article titled, Effectors and effects of arginine methylation
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Articles

Modulation of chromatin architecture influences the neuronal nucleus through activity-regulated gene expression

Robert S. Porter, Shigeki Iwase
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (2): 703–713.
https://doi.org/10.1042/BST20220889
Published: 16 March 2023
View article titled, Modulation of chromatin architecture influences the neuronal nucleus through activity-regulated gene expression
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Articles

The influence of high-order chromatin state in the regulation of stem cell fate

Xinpeng Chen, Haiyan Lin, Guohong Li
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1809–1822.
https://doi.org/10.1042/BST20220763
Published: 09 December 2022
View article titled, The influence of high-order chromatin state in the regulation of stem cell fate
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Articles

Exploring craniofacial and dental development with microRNAs

Dan Su, Tadkamol Krongbaramee, Hongli Sun, Liu Hong, Brad A. Amendt
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1897–1909.
https://doi.org/10.1042/BST20221042
Published: 09 December 2022
View article titled, Exploring craniofacial and dental development with microRNAs
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Articles

The remodeling of Z-DNA in the mammalian germ line

Yingying Meng, Piroska E. Szabó
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1875–1884.
https://doi.org/10.1042/BST20221015
Published: 01 December 2022
View article titled, The remodeling of Z-DNA in the mammalian germ line
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Articles

Transcriptional plasticity of fibroblasts in heart disease

Rudi Micheletti, Michael Alexanian
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (5): 1247–1255.
https://doi.org/10.1042/BST20210864
Published: 25 October 2022
View article titled, Transcriptional plasticity of fibroblasts in heart disease
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Articles

Small regulatory RNAs in rice epigenetic regulation

So Young Park, Jungnam Cho, Dong-Hoon Jeong
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (3): 1215–1225.
https://doi.org/10.1042/BST20210336
Published: 17 May 2022
View article titled, Small regulatory RNAs in rice epigenetic regulation
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Articles

Encyclopaedia of eukaryotic DNA methylation: from patterns to mechanisms and functions

Peter Sarkies
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (3): 1179–1190.
https://doi.org/10.1042/BST20210725
Published: 06 May 2022
View article titled, Encyclopaedia of eukaryotic DNA methylation: from patterns to mechanisms and functions
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Articles

Mitotic drive in asymmetric epigenetic inheritance

Rajesh Ranjan, Xin Chen
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 675–688.
https://doi.org/10.1042/BST20200267
Published: 19 April 2022
View article titled, Mitotic drive in asymmetric epigenetic inheritance
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Articles

To be or not be (in the LAD): emerging roles of lamin proteins in transcriptional regulation

Ezequiel Nazer
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 1035–1044.
https://doi.org/10.1042/BST20210858
Published: 19 April 2022
View article titled, To be or not be (in the LAD): emerging roles of lamin proteins in transcriptional regulation
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Articles

Emerging roles of lncRNAs in the pathogenesis, diagnosis, and treatment of trigeminal neuralgia

Tianyi Wang, Liu Liu, Dongzhe Song, Dingming Huang
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 1013–1023.
https://doi.org/10.1042/BST20220070
Published: 19 April 2022
View article titled, Emerging roles of lncRNAs in the pathogenesis, diagnosis, and treatment of trigeminal neuralgia
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Articles

Acidic patch histone mutations and their effects on nucleosome remodeling

Hai T. Dao, Linh T. D. Pham
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 907–919.
https://doi.org/10.1042/BST20210773
Published: 31 March 2022
View article titled, Acidic patch histone mutations and their effects on nucleosome remodeling
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Articles

Epigenetic regulation of human non-coding RNA gene transcription

Marco Morselli, Giorgio Dieci
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 723–736.
https://doi.org/10.1042/BST20210860
Published: 14 March 2022
View article titled, Epigenetic regulation of human non-coding RNA gene transcription
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Articles

Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits

Ulduz Vafadarshamasbi, Emma Mace, David Jordan, Peter A. Crisp
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 583–596.
https://doi.org/10.1042/BST20210908
Published: 25 February 2022
View article titled, Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits
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Articles

Whole-genome methods to define DNA and histone accessibility and long-range interactions in chromatin

Luke T. Marr, Prasoon Jaya, Laxmi N. Mishra, Jeffrey J. Hayes
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 199–212.
https://doi.org/10.1042/BST20210959
Published: 15 February 2022
View article titled, Whole-genome methods to define DNA and histone accessibility and long-range interactions in chromatin
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Articles

Multiple roles of Pol epsilon in eukaryotic chromosome replication

Milos A. Cvetkovic, Esther Ortega, Roberto Bellelli, Alessandro Costa
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 309–320.
https://doi.org/10.1042/BST20210082
Published: 07 February 2022
View article titled, Multiple roles of Pol epsilon in eukaryotic chromosome replication
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Articles

Epigenetic mechanisms in paediatric brain tumours: regulators lose control

Sara Badodi, Silvia Marino
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 167–185.
https://doi.org/10.1042/BST20201227
Published: 25 January 2022
View article titled, Epigenetic mechanisms in paediatric brain tumours: regulators lose control
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Articles

Role of macronutrient intake in the epigenetics of obesity

Priyadarshni Patel, Jeganathan Ramesh Babu, Xu Wang, Thangiah Geetha
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 487–497.
https://doi.org/10.1042/BST20211069
Published: 07 January 2022
View article titled, Role of macronutrient intake in the epigenetics of obesity
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Articles

Regulatory long non-coding RNAs in root growth and development

Thomas Roulé, Martin Crespi, Thomas Blein
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 403–412.
https://doi.org/10.1042/BST20210743
Published: 23 December 2021
View article titled, Regulatory long non-coding RNAs in root growth and development
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Articles

The tandem repeat modules of Xist lncRNA: a swiss army knife for the control of X-chromosome inactivation

Ana Cláudia Raposo, Miguel Casanova, Anne-Valerie Gendrel, Simão Teixeira da Rocha
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (6): 2549–2560.
https://doi.org/10.1042/BST20210253
Published: 09 December 2021
View article titled, The tandem repeat modules of Xist lncRNA: a swiss army knife for the control of X-chromosome inactivation
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Articles

X-chromosome reactivation: a concise review

Alessandra Spaziano, Irene Cantone
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (6): 2797–2805.
https://doi.org/10.1042/BST20210777
Published: 25 November 2021
View article titled, X-chromosome reactivation: a concise review
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Articles

The role of chromatin at transcription-replication conflicts as a genome safeguard

Aleix Bayona-Feliu, Andrés Aguilera
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (6): 2727–2736.
https://doi.org/10.1042/BST20210691
Published: 25 November 2021
View article titled, The role of chromatin at transcription-replication conflicts as a genome safeguard
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Articles

Structural insights into the interactions of Polycomb Repressive Complex 2 with chromatin

Akhil Gargey Iragavarapu, Liqi Yao, Vignesh Kasinath
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (6): 2639–2653.
https://doi.org/10.1042/BST20210450
Published: 08 November 2021
View article titled, Structural insights into the interactions of Polycomb Repressive Complex 2 with chromatin
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Articles

Chemical biology approaches to study histone interactors

Antony J. Burton, Ghaith M. Hamza, Andrew X. Zhang, Tom W. Muir
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (5): 2431–2441.
https://doi.org/10.1042/BST20210772
Published: 28 October 2021
View article titled, Chemical biology approaches to study histone interactors
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