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Keywords: Archaea
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Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1931–1939.
Published: 13 December 2022
... circles and binding sites for the Sulfolobus -specific SMC superfamily protein ClsN indicated. The Sulfolobus A and B compartments are indicated by boxing. archaea CID cohesin condensin SMC TAD The seminal studies of Woese and Fox revealed Archaea to be a distinct domain of life...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (6): 2359–2376.
Published: 10 December 2020
...Ekaterina Zabolotnaya; Ioanna Mela; Robert M. Henderson; Nicholas P. Robinson The bacterial SbcC/SbcD DNA repair proteins were identified over a quarter of a century ago. Following the subsequent identification of the homologous Mre11/Rad50 complex in the eukaryotes and archaea, it has become clear...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (3): 1035–1046.
Published: 03 June 2020
... of the proteins inserted into those membranes. They are synthesized by two main pathways, the so-called eukaryotic pathway, exclusively found in mitochondria, and the prokaryotic pathway, present in most bacteria and archaea. In the prokaryotic pathway, the first and the third reactions are catalyzed...
Includes: Supplementary data
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1895–1907.
Published: 10 December 2019
...Andrea Söllinger; Tim Urich Research on methanogenic Archaea has experienced a revival, with many novel lineages of methanogens recently being found through cultivation and suggested via metagenomics approaches, respectively. Most of these lineages comprise Archaea (potentially) capable...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (1): 461–468.
Published: 19 February 2019
... ( [email protected] ) 21 12 2018 25 1 2019 28 1 2019 © 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society 2019 archaea Haloferax volcanii transcription termination Pro- and eukaryotes use multisubunit RNA polymerases (RNAPs...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (1): 351–356.
Published: 15 January 2019
... dinucleotide formation is the rate-limiting step in primer synthesis. The Author declares that there are no competing interests associated with this manuscript. References 1 Barry , E.R. and Bell , S.D. ( 2006 ) DNA replication in the archaea . Microbiol. Mol. Biol. Rev. 70 , 876...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (6): 1449–1458.
Published: 20 November 2013
...-BY) ( http://creativecommons.org/licenses/by/3.0/ ) which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited. Archaea clustered regularly interspaced short palindromic repeats spacer (CRISPR spacer) pMGB1 Sulfolobus Sulfolobus...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 356–361.
Published: 29 January 2013
... shibatae RNAP) in complex with dsDNA (double-stranded DNA) constitutes a new piece of information helping the understanding of the mechanisms for DNA stabilization at the position downstream of the catalytic site during transcription. In Archaea, in contrast with Eukarya, downstream DNA stabilization...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 399–404.
Published: 29 January 2013
... been identified. Although the function of RIO kinases in Archaea remains to be resolved, bioinformatics analysis (e.g. comparison of the phylogenetic distribution and gene neighbourhood analysis, as well as interaction analysis) in combination with the available phosphoproteome study of Sulfolobus...
Articles
Changyi Zhang, Bin Tian, Suming Li, Xiang Ao, Kevin Dalgaard, Serkan Gökce, Yunxiang Liang, Qunxin She
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 405–410.
Published: 29 January 2013
..., these organisms are genetically tractable as they form colonies on solid media solidified with Gelrite. Consequently, Sulfolobus species are model organisms for studying biological principles in Archaea, the third domain of life, as well as for studying molecular mechanisms at extremely high temperatures...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 326–331.
Published: 29 January 2013
... transcription machinery at promoter regions. Archaea are characterized by a simplified eukaryote-like basal transcription machinery and bacteria-type TFs, which convert sequence information into a gene expression output according to cis -regulatory rules. In the present review, we discuss the current state...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 332–338.
Published: 29 January 2013
.... kodakarensis are summarized. 1 To whom correspondence should be addressed (email [email protected] ). 30 10 2012 © The Authors Journal compilation © 2013 Biochemical Society 2013 Archaea DNA replication initiation of replication proliferating-cell nuclear antigen (PCNA...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 416–420.
Published: 29 January 2013
... by the newly found Nanoarchaeota and Korarchaeota. 1 email [email protected] 26 10 2012 © The Authors Journal compilation © 2013 Biochemical Society 2013 Archaea Bacteria cultivation evolution phylogeny thermophile Table 1 Examples of genes...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 427–431.
Published: 29 January 2013
.... By contrast, the proteins/genes involved in CoA biosynthesis in archaea have not been fully clarified, and much has to be learned before we obtain a general understanding of how this molecule is synthesized. In the present paper, we review the current status of the research on CoA biosynthesis in the archaea...
Articles
Lina Kaminski, Shai Naparstek, Lina Kandiba, Chen Cohen-Rosenzweig, Adi Arbiv, Zvia Konrad, Jerry Eichler
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 432–435.
Published: 29 January 2013
... compilation © 2013 Biochemical Society 2013 Clearly, further study of Hfx. volcanii N-glycosylation will continue to reveal new twists on this universal post-translational modification. The future indeed looks sweet. Molecular Biology of Archaea 3: An Independent Meeting held at the Max Planck...
Articles
Evelyne Marguet, Marie Gaudin, Emilie Gauliard, Isabelle Fourquaux, Stephane le Blond du Plouy, Ikuo Matsui, Patrick Forterre
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 436–442.
Published: 29 January 2013
... resembling nanotubes recently observed in Firmicutes. As suggested for bacteria, archaeal nanopods and/or nanotubes could be used to expand the metabolic sphere around cells and/or to promote intercellular communication. Archaea extracellular membrane vesicle hyperthermophile nanopod nanotube...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 443–450.
Published: 29 January 2013
...David Prangishvili; Eugene V. Koonin; Mart Krupovic Archaeal viruses, especially viruses that infect hyperthermophilic archaea of the phylum Crenarchaeota, constitute one of the least understood parts of the virosphere. However, owing to recent substantial research efforts by several groups...
Includes: Supplementary data
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 451–457.
Published: 29 January 2013
... Archaea eukaryogeneois horizontal gene transfer (HGT) last eukaryotic common ancestor (LECA) phagocytosing archaeon theory (PhAT) The evolutionary origin of the eukaryotic cell represents an enigmatic, yet largely incomplete, puzzle. Despite the large number of mutually incompatible scenarios...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 339–343.
Published: 29 January 2013
.... 1 email [email protected] 8 11 2012 © The Authors Journal compilation © 2013 Biochemical Society 2013 Archaea gene conversion Haloarchaea polyploidy radiation resistance survival The rate of spontaneous mutations in Hfx. volcanii has been quantified...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 344–349.
Published: 29 January 2013
... the sRNA populations in Archaea are considerably less well characterized. Recent analyses on a genome-wide scale particularly using high-throughput sequencing techniques demonstrated the presence of high numbers of sRNA candidates in several archaea. However, elucidation of the molecular mechanism of sRNA...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 309–313.
Published: 29 January 2013
.... 1 To whom correspondence should be addressed (email [email protected] ). 2 11 2012 © The Authors Journal compilation © 2013 Biochemical Society 2013 Archaea lytic virus Sulfolobus islandicus rod-shaped virus 2 (SIRV2) Sulfolobus turreted icosahedral virus (STIV...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (1): 393–398.
Published: 29 January 2013
... and abiotic surfaces and form complex biofilm structures. Biofilm-forming archaea were identified in a broad range of extreme and moderate environments. Natural biofilms observed are mostly mixed communities composed of archaeal and bacterial species of various abundances. The physiological functions...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (1): 116–121.
Published: 19 January 2011
...Rosalie P.C. Driessen; Remus Th. Dame Architectural proteins play an important role in compacting and organizing the chromosomal DNA in all three kingdoms of life (Eukarya, Bacteria and Archaea). These proteins are generally not conserved at the amino acid sequence level, but the mechanisms...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (1): 36–44.
Published: 19 January 2011
...Nicolas Soler; Marie Gaudin; Evelyne Marguet; Patrick Forterre Several families of plasmids and viruses (PVs) have now been described in hyperthermophilic archaea of the order Thermococcales. One family of plasmids replicates by the rolling circle mechanism, whereas most other PVs probably...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (1): 89–93.
Published: 19 January 2011
... of translation regulation mechanisms. Initiation has incurred an extensive evolutionary divergence among the primary domains of cell descent. The Archaea, albeit prokaryotes, have an initiation mechanism and apparatus more complex than those of the Bacteria; the molecular details of archaeal initiation are just...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (1): 155–158.
Published: 19 January 2011
...Jennifer A. Littlechild Thermophilic enzymes have advantages for their use in commercial applications and particularly for the production of chiral compounds to produce optically pure pharmaceuticals. They can be used as biocatalysts in the application of ‘green chemistry’. The thermophilic archaea...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2005) 33 (6): 1471–1473.
Published: 26 October 2005
...E.L. Bolt Overcoming DNA replication fork blocks is essential for completing genome duplication and cell division. Archaea and eukaryotes drive replication using essentially the same protein machinery. Archaea may be a valuable resource for identifying new helicase components at advancing forks...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2005) 33 (4): 780–784.
Published: 01 August 2005
... riboflavin synthase appear to have diverged early in the evolution of Archaea from a common ancestor. © 2005 The Biochemical Society 2005 archaea eubacteria evolution reaction mechanism riboflavin biosynthesis riboflavin synthase Flavocoenzymes are essential cofactors for the catalysis...
Articles
D. Prieur, G. Erauso, C. Geslin, S. Lucas, M. Gaillard, A. Bidault, A.-C. Mattenet, K. Rouault, D. Flament, P. Forterre, M. Le Romancer
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 184–187.
Published: 01 April 2004
..., Ifremer Centre de Brest, Technopôle Brest-Iroise, 29280 Plouzané, France. 19 September 2003 © 2004 Biochemical Society 2004 Archaea genetic tools plasmid Pyrococcus Thermococcales virus Abbreviations used: MGE, mobile genetic element; VLP, virus-like-particle...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 255–258.
Published: 01 April 2004
... Biochemical Society 2004 Aeropyrum pernix Archaea dehydrogenase hyperthermophilic Sulfolobus solfataricus Abbreviations used: GAPDH, glyceraldehyde-3-phosphate dehydrogenase; ADH, alcohol dehydrogenase. Thermophiles 2003 255 Hyperthermophilic dehydrogenase enzymes J.A. Littlechild1...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 303–304.
Published: 01 April 2004
...H. Ahmed; B. Tjaden; R. Hensel; B. Siebers Genome data as well as biochemical studies have indicated that – as a peculiarity within hyperthermophilic Archaea – Thermoproteus tenax uses three different pathways for glucose metabolism, a variant of the reversible EMP (Embden–Meyerhof–Parnas) pathway...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 259–263.
Published: 01 April 2004
... so far been discovered, class I mainly found in Eucarya and class II mainly in Bacteria. Only recently were genes encoding proteins with FBPA activity identified in Archaea. Archaeal FBPAs do not share any significant overall sequence identity with members of the traditional classes of FBPAs, raising...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 236–239.
Published: 01 April 2004
...A.I. Majerník; E.R. Jenkinson; J.P.J. Chong DNA replication enzymes in the thermophilic Archaea have previously attracted attention due to their obvious use in methods such as PCR. The proofreading ability of the Pyrococcus furiosus DNA polymerase has resulted in a commercially successful product...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 218–221.
Published: 01 April 2004
... in determination of microbial community composition. In particular, Archaea-specific primer sequences typically lack specificity for the Korarchaeota and Nanoarchaea and are often biased towards certain clades. New primer pairs specifically designed for ‘universal’ archaeal 16 S rDNA sequence amplification...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 199–203.
Published: 01 April 2004
..., a held at University of Exeter, 15–19 September 2003 11 December 2003 © 2004 Biochemical Society 2004 Archaea cell surface intracellular vesicle lipid outer membrane transmission electron microscopy Abbreviation used: TEM, transmission electron microscopy...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 222–226.
Published: 01 April 2004
... University, Nanjing, People's Republic of China. 19 September 2003 © 2004 Biochemical Society 2004 Archaea gene capture horizontal gene transfer integrase integrated element pNOB8 type SSV type Abbreviations used: attB , attachment site of host chromosome; attL...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 204–208.
Published: 01 April 2004
... Biochemical Society 2004 Archaea genome hyperthermophile virus Abbreviation used: ORF, open reading frame. 204 Biochemical Society Transactions (2004) Volume 32, part 2 Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses D. Prangishvili*1 and R.A...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (2): 273–275.
Published: 01 April 2004
... and chemical demand for oxygen is significantly increased during the bioleaching process. Sparging with enriched oxygen gas may offer an alternative process option to increased agitation and sparged aeration, to overcome the mass transfer difficulties at elevated temperatures where thermophilic Archaea, rather...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (6): 1330–1334.
Published: 01 December 2003
... June 2003 © 2003 Biochemical Society 2003 archaea phylogeny structure superoxide dismutase thermostability Abbreviations used: SOD, superoxide dismutase; SaSOD, Fe-SOD from Sulfolobus acidocaldarius ; T m , melting temperature. 1 To whom correspondence should...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 699–702.
Published: 01 June 2003
... to efficiently eliminate uracil from archaeal genomes. 1 To whom correspondence should be addressed (e-mail [email protected] ). Molecular Mechanisms and Manipulation in Archaea, a Biochemical Society-sponsored meeting held at The University of Nottingham, 30–31 January 2003 25 January...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 686–689.
Published: 01 June 2003
...G.W. Hutcheon; A. Bolhuis The twin-arginine translocation (Tat) pathway is a system with the unique ability to export proteins in a fully folded conformation. Its main components are TatA, TatB and TatC, all of which are required for Tat-dependent export. The Tat pathway is found in several Archaea...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 703–705.
Published: 01 June 2003
... remote from replication origins. These functions are crucial to ensuring that genomes are transmitted successfully into subsequent generations of cells. Enzymes of HR have been unearthed in all three domains of life: bacteria, Archaea and eukarya. Helicases that specifically unwind branched DNA molecules...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 706–710.
Published: 01 June 2003
... systems such as Escherichia coli and Saccharomyces cerevisiae . Since most archaeal species are extremophilic and difficult to cultivate, current knowledge of recombination in the Archaea is confined largely to comparative genomics and biochemistry. A clear view of what we can learn will not emerge until...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 690–693.
Published: 01 June 2003
...M.F. White It is now generally accepted that the Archaea share many similarities in their information-processing pathways with eukarya. Archaeal and eukaryal DNA replication and transcriptional machineries show particularly striking similarities, and the archaeal processes have been used...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 694–698.
Published: 01 June 2003
...S. McCready; L. Marcello Halobacterium is one of the few known Archaea that tolerates high levels of sunlight in its natural environment. Photoreactivation is probably its most important strategy for surviving UV irradiation and we have shown that both of the major UV photoproducts, cyclobutane...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 674–676.
Published: 01 June 2003
...I. Dionne; N.P. Robinson; A.T. McGeoch; V.L. Marsh; A. Reddish; S.D. Bell Studies of the DNA-replication machinery of Archaea have revealed striking similarities to that of eukaryotes. Indeed, it appears that in most cases Archaea possess a simplified version of the eukaryotic replication apparatus...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (4): 710–712.
Published: 01 August 2002
... differed considerably from iron-repleted ones. Furthermore, both types of membrane exhibited different degrees of inhibition by cyanide. 1 To whom correspondence should be addressed (e-mail [email protected] ) 7 3 2002 © 2002 Biochemical Society 2002 Archaea...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (4): 713–715.
Published: 01 August 2002
... ferritin although it shares only little sequence homology with non-haem bacterial ferritin. 1 To whom correspondence should be addressed (e-mail [email protected] ) 7 3 2002 © 2002 Biochemical Society 2002 Archaea molecular modelling Dps, starvation-induced...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (4): 685–687.
Published: 01 August 2002
...-starved compared with iron-repleted cells. However, no differences in aconitase levels between iron-starved and iron-supplemented cells could be detected by immunostaining. © 2002 Biochemical Society 2002 Archaea heterologous expression iron-sulphur cluster thermophilic aconitase IRP...
