Association between the TIMD4-HAVCR1 variants and serum lipid levels, coronary heart disease and ischemic stroke risk and atorvastatin lipid-lowering efficacy

Little is known about the association of the TIMD4 (T-cell immunoglobulin and mucin domain 4 gene)-HAVCR1 (hepatitis A virus cellular receptor 1) variants and lipid metabolism, the risk of coronary heart disease (CHD) and ischemic stroke (IS). The present study aimed to determine the TIMD4-HAVCR1 variants, their haplotypes and gene–environment interactions on serum lipid levels, the risk of CHD and IS, and the lipid-lowering efficacy of atorvastatin in a southern Chinese Han population. Genotypes of three variants in 622 controls, 579 CHD, and 546 IS patients were determined by the Snapshot technology. Atorvastatin calcium tablet (20 mg/day) was given in 724 hyperlipidemic patients for 8 weeks after genotyping. The rs12522248 genotypic and allelic frequencies were different between controls and patients, and were associated with the risk of CHD and IS. The rs1501908G-rs12522248T-rs2036402T haplotype was associated with an increased risk of CHD; the G-C-T haplotype was associated with lower risk of CHD; and the C-C-C haplotype was associated with an increased risk of IS. Variants and their haplotypes in controls were associated with triglyceride (rs1501908), low-density lipoprotein cholesterol (LDL-C, rs1501908, G-T-T), high-density lipoprotein cholesterol (HDL-C, rs12522248, C-C-C) and the ratio of total cholesterol (TC) to HDL-C (C-C-C). Interactions of rs1501908- and rs2036402-alcohol (HDL-C); rs1501908- and rs12522248-high body mass index (hBMI, ≥24 kg/m2; TC); and TIMD4-HAVCR1 variants-atorvastatin on several lipid parameters were detected. Interactions of rs12522248TC/CC-hBMI, G-T-T-, and C-C-C-smoking on the risk of CHD; and C-C-C-smoking, C-C-C-, and G-C-T-hBMI on the risk of IS were also observed. These findings suggest that the TIMD4-HAVCR1 variants may be the genetic risk factors for CHD and IS.


Introduction
Coronary heart disease (CHD) and ischemic stroke (IS) remain the leading causes of morbidity and mortality globally [1,2]. The pathological basis of both diseases is atherosclerosis [3], which is a chronic process characterized by the combination of lipid accumulation and inflammatory immune processes in the arterial wall [4]. Atherogenic dislipidemia including elevated serum levels of total cholesterol (TC), triglyceride (TG), low-density lipoprotein cholesterol (LDL-C) and apolipoprotein (Apo) B, and low levels of high-density lipoprotein cholesterol (HDL-C). ApoA1 is a serious risk factor for atherosclerotic vascular diseases [5][6][7][8][9][10]. Both blood lipid disorder and atherosclerotic disease are multifactorial and complicated diseases caused by genetic factors [11,12], environmental factors [13][14][15][16], and their interactions [17][18][19]. Family history and twin studies showed that almost 40-70% of the interindividual variation in plasma lipid phenotypes [20,21] and 30-60% of the incidence of CHD and IS [22] can be explained by genetic factors, suggesting a considerable genetic contribution. Therefore, single nucleotide polymorphisms (SNPs) in the lipid-related genes [12,23,24] may have some associations with serum lipid levels, and the risk of CHD and IS.
The T-cell immunoglobulin and mucin domain 4 gene (TIMD4) and the hepatitis A virus cellular receptor 1 gene (HAVCR1; also known as TIMD1), the associated interval spanned two genes [24], are located on chromosome 5q23 and are members of the T-cell immunoglobulin domain and mucin domain gene family that plays a critical role in regulating immune responses. TIMD4 is exclusively expressed on antigen-presenting cells, where it mediates phagocytosis of apoptotic cells and plays an important role in maintaining tolerance [25]. In contrast, HAVCR1, an important susceptibility gene for asthma and allergy, is preferentially expressed on T-helper 2 (Th2) cells and functions as a potent costimulatory molecule for T-cell activation [25]. Blockade of TIMD4 and HAVCR1 enhanced the risk of atherosclerosis in LDL receptor-deficient mice [26]. Genome-wide association study (GWAS) and other studies performed in different populations have reported that the TIMD4-HAVCR1 variants were associated with serum lipid traits, but the association was inconsistent [24,[27][28][29]. In addition, little is known about the association of the TIMD4-HAVCR1 SNPs and the risk of CHD and IS. Therefore, the purpose of the present study was to detect the association of three SNPs (rs1501908, rs12522248, and rs2036402) in or near TIMD4-HAVCR1, their haplotypes and G × E interactions on serum lipid traits, the risk of CHD and IS, and the lipid-lowering efficacy of atorvastatin in a southern Chinese Han population.

Study patients
A total of 1125 unrelated patients with CHD (n=579) and IS (n=546) were recruited from hospitalized patients in the First Affiliated Hospital, Guangxi Medical University. The diagnosis of CHD was based on typical ischemic discomfort plus one or more of electrocardiographic change (ST-segment depression or elevation of ≥0.5 mm, T-wave inversion of ≥3 mm in ≥3 leads or left bundle branch block), as well as increase in the cardiac markers, including creatinine kinase-MB and troponin T. Coronary angiography was performed in patients with CHD. The coronary angiograms were reviewed by two independent angiographers who were blinded to the results of the genotypes. For a vessel to be scored, stenosis ≥50% had to be noted in an epicardial coronary vessel of interest or in one of its major branches. In the event of discordance of the number of vessels scored between the two reviewers, angiograms were scored by a third independent reviewer. The selected CHD patients were subject to significant coronary stenosis (≥50%) in at least either one of the three main coronary arteries or their major branches (branch diameter ≥2 mm). Additionally, angiographic severity of disease was classified according to the number of coronary vessels with significant stenosis (luminal narrowing ≥50%) as one-, two-or three-vessel disease in the three major coronary arteries [30,31]. The diagnosis and classification of IS was ascertained in accordance with the TOAST (Trial of Org 10172 in Acute Stroke Treatment) criteria [32] after strict neurological examination, computed tomography, or MRI. The selected IS patients in the study included individuals who were eligible for one of the two subtypes of TOAST criteria: large-artery atherosclerosis and small-vessel occlusion. Individuals with a history of hematologic or brain MRI revealing cerebral hemorrhage, cardioembolic stroke, or unspecified stroke, neoplastic or intracranial space-occupying lesion, infection and other types of intracranial lesions, renal, liver, thyroid, autoimmune diseases, and type I diabetes were excluded. The selected IS patients who had a past history of CHD or IS were excluded from the study.

Control subjects
A total of 622 control subjects matched by age, gender, and ethnic group were randomly selected from the healthy adults who underwent periodical medical check-up at the Physical Examination Center of the First Affiliated Hospital, Guangxi Medical University during the same period when CHD and IS patients were recruited. The controls were free of CHD and IS by questionnaires, history-taking, and clinical examination. The examination comprised physical examination, blood sampling, electrocardiography, chest X-ray, and Doppler echocardiography. All enrolled individuals were Han Chinese from Guangxi, the People's Republic of China. Information on demography, socioeconomic status, medical history, and lifestyle factors was collected by trained research staff with standardized questionnaires for all participants. The reported investigations were in accordance with the principles of the Declaration of Helsinki. All procedures of the investigation were carried out following the rules of the Declaration of Helsinki of 1975 (http://www.wma.net/en/30publications/10policies/b3/), revised in 2008. The study design was approved by the Ethics Committee of the First Affiliated Hospital, Guangxi Medical University (number:

Statistical analyses
The statistical analyses were carried out using the statistical software package SPSS 17.0 (SPSS, Inc., Chicago, Illinois). Quantitative variables were expressed as mean + − S.D. (serum TG levels were presented as medians and interquartile ranges). Qualitative variables were expressed as percentages. Allele frequency was determined via direct counting, and the standard goodness-of-fit test was used to test the Hardy-Weinberg equilibrium (HWE). A chi-square analysis was used to evaluate the difference in genotype distribution and sex ratio between the groups. The general characteristics between patient and control groups were tested by the Student's unpaired t test. The association of genotypes and serum lipid parameters was tested by analysis of covariance (ANCOVA) for TC, HDL-C, LDL-C, TC/HDL-C, ApoA1, ApoB, and ApoA1/ApoB and Kruskal-Wallis test for TG. Any variants associated with the serum lipid parameter at a value of P<0.017 (corresponding to P<0.05 after adjusting for three independent tests by the Bonferroni correction) were considered statistically significant. Unconditional logistic regression was used to assess the correlation between the risk of CHD and IS and genotypes. Age, gender, BMI, smoking, and alcohol consumption were adjusted for the statistical analysis. Odds ratio (OR) and 95% confidence interval (95% CI) were calculated using The value of TG was presented as median (interquartile range), the difference between CHD/IS patients and controls was determined by the Wilcoxon-Mann-Whitney test. Abbreviations: P CHD , CHD compared with controls; P IS , IS compared with controls.
unconditional logistic regression. The interactions of three SNPs with alcohol consumption, cigarette smoking, BMI ≥24 kg/m 2 , age, and sex on serum lipid levels and the risk of CHD and IS were detected by using a factorial regression analysis [45][46][47][48][49]. After controlling for potential confounders, a P I ≤0.003 was considered statistically significant after Bonferroni correction (according to three SNPs and five interactive factors). Pairwise linkage disequilibria and haplotype frequencies amongst the SNPs were analyzed using Haploview (Broad Institute of MIT and Harvard, U.S.A., version 4.2).

General characteristics
The general characteristics of the patients and healthy controls are summarized in Table 1. The values of BMI, systolic blood pressure, pulse pressure, TG, and the ratio of TC to HDL-C were higher, but diastolic blood pressure, TC, HDL-C, ApoA1, the percentage of alcohol consumption, and the ratio of ApoA1 to ApoB were lower in CHD patients than in controls (P<0.05-0.001). The values of BMI, systolic blood pressure, diastolic blood pressure, pulse pressure, TG, and the ratio of TC to HDL-C were higher, whereas those of TC, HDL-C, ApoA1, the percentage of alcohol consumption, and the ratio of ApoA1 to ApoB were lower in IS patients than in controls (P<0.05-0.001).

Genotypic and allelic frequencies
The genotypic and allelic frequencies of the three TIMD4-HAVCR1 SNPs are presented in Table 2. The genotype distribution of the three SNPs was concordant with the HWE in patients and controls (P>0.05 for all). The genotypic and allelic frequencies of the rs12522248 SNP were different between controls and patients (CHD and IS, P<0.05 for all). There was no difference in the genotypic and allelic frequencies of the rs1501908 and rs2036402 SNPs between CHD or IS patients and controls (P>0.05 for each). Significant linkage disequilibrium (LD) was noted between the rs1501908 and rs2036402 SNPs; and between rs12522248 and rs2036402 SNPs in controls and patients (D >0.8).

TIMD4-HAVCR1 genotypes and the risk of CHD and IS
As shown in Figure 1, the genotypes of the rs12522248, but not the other two SNPs, were associated with the risk of CHD after the Bonferroni correction (a value of P<0.017 was considered statistically significant) in different genetic

Haplotypes and the risk of CHD and IS
As shown in the Figure 2, the haplotype of C-T-T (in order of the rs1501908, rs12522248, and rs2036402) was the commonest haplotype and represented ∼60% of the sample. The haplotype of G-T-T was associated with an increased risk for CHD (adjusted OR =1.28, 95% CI =1.05-1.57, P=0.015), but the haplotype of G-C-T was associated with a decreased risk for CHD (adjusted OR =0.39, 95% CI =0.19-0.83, P =0.015). The haplotype of C-C-C was associated with an increased risk for IS (adjusted OR =1.35, 95% CI =1.02-1.80, P =0.037).

Genotypes and serum lipid levels
The association of the TIMD4-HAVCR1 SNPs and serum lipid levels in controls is presented in Figure 3. Serum TG and LDL-C levels were different amongst the genotypes of the rs1501908 (P<0.01 for each), the rs1501908G allele carriers had lower TG and LDL-C levels than the rs1501908G allele noncarriers. Serum HDL-C levels were different amongst the genotypes of the rs12522248 (P<0.01), the rs12522248C allele carriers had lower HDL-C levels than the rs12522248C allele noncarriers.

Haplotypes and serum lipid levels
The association of the haplotypes and serum lipid levels is shown in Figure 4. The G-T-T haplotype carriers had higher LDL-C levels than the G-T-T haplotype noncarriers (P<0.01). The C-C-C haplotype carriers had lower HDL-C levels and higher TC/HDL-C ratio than the C-C-C haplotype noncarriers (P<0.01 for each).
Interactions of the TIMD4-HAVCR1 SNPs and drinking, smoking, BMI, age, and sex on serum lipid levels and the risk of CHD and IS Table 3 shows the interactions of the TIMD4-HAVCR1 SNPs and drinking, smoking, BMI, age, and sex on serum

Figure 2. Haplotype frequencies of the three TIMD4-HAVCR1 SNPs and the risk of CHD and IS
The haplotypes consist of three alleles in order of the rs1501908, rs12522248, and rs2036402 SNPs; *P < 0.05.

Figure 3. Genotypes of the three TIMD4-HAVCR1 SNPs and serum lipid levels in controls
The value of TG was presented as median (interquartile range), and the difference amongst the genotypes was determined by the Kruskal-Wallis test. *P<0.017 was considered statistically significant (corresponding to P<0.05 after adjusting for three independent tests by the Bonferroni correction).
lipid levels and the risk of CHD and IS. The SNPs of rs1501908 and rs2036402 interacted with alcohol consumption to influence serum HDL-C levels ( Figure 5A,B). The SNPs of rs1501908 and rs12522248 interacted with BMI ≥24 kg/m 2 to modulate serum TC levels ( Figure 5C,D). The rs12522248CT/CC genotypes interacted with BMI ≥24 kg/m 2 to increase the risk of CHD (P<0.001). No interaction of the genotypes and smoking, age, and sex on the risk of CHD and IS was detected in our study populations.

Interactions of the haplotypes and BMI on the risk of CHD
The interactions of several haplotypes and BMI ≥24 kg/m 2 on the risk of CHD were also noted in the present study.

Interactions of the haplotypes and BMI on the risk of IS
The interactions of several haplotypes and BMI ≥24 kg/m 2 on the risk of IS were also observed in the present study. As

Interactions of the TIMD4-HAVCR1 SNPs and atorvastatin on serum lipid levels in hyperlipidemia
After 8-week treatment of atorvastatin, the levels of TC, TG, and LDL-C and the ratio of TC/HDL-C were significantly decreased in the hyperlipidemic patients (P<0.001 for all; Figure 6). There was no significant difference in serum HDL-C, ApoA1, and ApoB levels. We also found that the TIMD4-HAVCR1 SNPs changed the effects of atorvastatin treatment on some serum lipid parameters. The rs1501908G and rs12522248C allele carriers had lower TC and LDL-C levels than the rs1501908G and rs12522248C allele noncarriers, respectively after atorvastatin treatment. The subjects with rs2036402TC genotype had lower TC and LDL-C levels than the subjects with rs2036402TT genotype after atorvastatin treatment. However, the subjects with rs1501908CC, rs12522248TT, and rs2036402TT genotypes had lower ApoA1 levels than the subjects with rs1501908CG/GG, rs12522248TC/CC, and rs2036402TC/CC genotypes, respectively after atorvastatin treatment (P<0.01 for all; Figure 6).

Discussion
The present study showed that the genotypic and allelic frequencies of the rs12522248 SNP were different between controls and CHD or IS patients, and the rs12522248 genotypes or alleles were associated with the risk of CHD and IS in different genetic models. Strong LD was noted amongst these SNPs. The haplotype of C-T-T was the commonest haplotype. The G-T-T haplotype was associated with an increased risk for CHD, but the G-C-T haplotype was associated with a decreased risk for CHD. The C-C-C haplotype was associated with an increased risk for IS. The rs1501908G allele carriers had lower TG and LDL-C levels than the rs1501908G allele noncarriers. The rs12522248C allele carriers had lower serum HDL-C levels than the rs12522248C allele noncarriers. The G-T-T haplotype carriers had higher LDL-C levels than the G-T-T haplotype noncarriers. The C-C-C haplotype carriers had lower HDL-C levels and higher ratio of TC to HDL-C than the C-C-C haplotype noncarriers. The SNPs of rs1501908 and rs2036402 interacted with alcohol consumption to influence serum HDL-C levels. The SNPs of rs1501908 and rs12522248 interacted with BMI ≥24 kg/m 2 to modify serum TC levels. The rs12522248TC/CC genotypes interacted with BMI ≥24 kg/m 2 to increase the risk of CHD. The interactions of several haplotypes and some environment factors on the risk of CHD and IS were also observed. Several previous studies have reported the association of many SNPs in the TIMD4-HAVCR1 with one or more lipid traits [24,[27][28][29]. However, not all researches have consistent findings. A previous GWAS showed that the rs1501908 SNP was associated with LDL-C in European ancestry, while a replication research conducted in Shanghai in China indicated that the rs1501908 variant in the TIMD4-HAVCR1 was associated with TC, TG, LDL-C, and the ratio of TC to HDL-C [27]. Aguilar-Salinas et al. [29] showed that the rs2036402 SNP was associated with hypertriglyceridemia in Mexicans, but not in Caucasians. In the present study, we found that the rs1501908 SNP was associated with serum TG and LDL-C levels, which were partly consistent with the previous studies [24,27]. The rs12522248 SNP was associated with HDL-C levels, the 12522248C allele carriers had lower HDL-C concentrations than the 12522248C allele noncarriers, which was not reported previously. However, the association of the rs2036402 SNP and serum lipid profiles had not been detected. We also firstly showed that the G-T-T haplotype carriers had higher LDL-C levels than the G-T-T haplotype noncarriers; and the C-C-C haplotype carriers had lower HDL-C levels and higher TC/HDL-C ratio than the C-C-C haplotype noncarriers. The reasons for these diverse findings remain unclear. It may be owing to the impact of other uncertain variants and the different genetic background, lifestyle and diet in different ethnic groups. Another possible reason is that the sample size may not be enough to detect the exact association. Therefore, further investigations with larger sample size are needed to confirm our findings.
We also found that the genotypic and allelic frequencies of the TIMD4-HAVCR1 rs12522248 SNP were different between controls and CHD or IS patients, the patients with CHD (19.0%) or IS (17.5%) had higher frequencies of rs12522248C allele than the controls (13.1%). The genotypes of the rs12522248 SNP were also associated with the risk of CHD and IS after the Bonferroni correction in different genetic models. The data in the International HapMap Project's database have showed that the frequency of rs12522248C allele was 25.9% in European, 20.23% in Han Chinese in Beijing, 12.4% in Japanese, and 12.8% in Sub-Saharan African. As compared with the other populations, we found that the frequency of the rs12522248C allele in our study populations was lower than that in Han Chinese from Beijing, which might be caused by different sample sizes and Han Chinese from Beijing and Guangxi are different parts of Han. The prevalence of the rs12522248C allele was higher in European than in Chinese. These results suggest that the rs12522248C allele variation may have a racial/ethnic-specificity. TIMD4, present on macrophages and dendritic cells, plays a critical role in apoptotic cell clearance and regulates the number of phosphatidylserine-expressing activated T cells, whereas HAVCR1 is expressed on activated T cells and is also found on dendritic cells and B cells [26]. Both apoptotic cell death and activated T cells play an important role in the maintenance of immune homeostasis in the atherosclerotic lesion [50][51][52][53]. A recent study showed that blockade of TIMD4 aggravates atherosclerosis likely by prevention of phagocytosis of phosphatidylserine-expressing apoptotic cells and activated T cells by TIMD4-expressing cells, whereas HAVCR1-associated effects on atherosclerosis are related to changes in Th1/Th2 balance and reduced circulating regulatory T cells [26]. Another study detected that mice deficient for TIMD4 or HAVCR1 have increased susceptibility for autoimmunity, as shown by hyperactive Tand B-cell responses in TIMD4 −/− mice [54] and increased Th2 responses in HAVCR1 −/− mice [55]. In a human population-based study, Lind et al. [56] found an association between HAVCR1 and plaque occurrence in carotid arteries using proteomic arrays. Zhao et al. [57] showed that TIMD4 mRNA negatively correlated with LDL levels in mice having type II diabetes mellitus. In addition, the TIMD4-HAVCR1 rs12522248 SNP in our present study was associated with serum HDL-C level, which has a strong effect on the risk of atherosclerosis related diseases. Taken together, the association of the rs12522248 SNP and the risk of CHD or IS might be owing to the immunosuppressive potency by regulating apoptotic cell clearance, the influence on adaptive immune responses, the association between the rs12522248 mutation and serum HDL-C levels or the influence of the other uncertain genes. To the best of our knowledge, this is the first report to evaluate the association between the rs12522248 SNP and the risk of CHD and IS. Therefore, these findings still need to be confirmed in the other populations with larger sample size.
The interactions of the TIMD4-HAVCR1 SNPs and their haplotypes and some environmental factors on serum lipid levels and the risk of CHD and IS have not been reported previously. In the present study, we showed that two TIMD4-HAVCR1 SNPs (rs1501918 and rs2036402) interacted with alcohol consumption to influence serum HDL-C levels. Two SNPs (rs1501918 and rs12522248) interacted with BMI ≥24 kg/m 2 to modulate serum TC levels. The haplotypes of G-T-T and C-C-C interacted with smoking to increase the risk of CHD. The haplotypes of C-T-T, G-T-T, C-C-C, and G-C-T in BMI ≥24 kg/m 2 were associated with an increased risk for CHD and IS. The rs12522248TC/CC genotypes interacted with BMI ≥24 kg/m 2 to increase the risk of CHD. It is well known that heavy alcohol intake, smoking and obesity have an unfavourable effect on lipid profiles and atherosclerotic disease. Several case-control and cohort studies have described a J-or U-shaped association between alcohol intake and atherogenesis [58]. A moderate intake of alcohol when taken on a regular basis has been showed to protect against CHD death, which has been ascribed to the changes in serum HDL-C, TG and ApoA1 levels [59]. However, results from the Italian longitudinal study on aging also showed that alcohol consumption was associated with worse hematological values of TC and LDL-C levels [60]. A previous study reported that for every 1-kg decrease in body weight, TG decreased by 0.011 mmol/l and HDL-C increased by 0.011 mmol/l, which have beneficial effects on atherosclerotic disease. Another study about the correlation of BMI and atherogenic lipoprotein profile showed that overweight participants presented with 30% higher TG levels and 9% lower HDL-C concentration compared with normal-weight individuals. Therefore, the results of exposure to different environmental factors might further modify the effect of genetic variation on serum lipid levels and atherosclerotic disease in our study populations.
The interactions of the TIMD4-HAVCR1 SNPs and statins are not well known. In the present study, we firstly showed that the TIMD4-HAVCR1 SNPs changed the efficacy of atorvastatin on some serum lipid parameters. The rs1501908G and rs12522248C allele carriers had lower TC and LDL-C levels than the rs1501908G and rs12522248C allele noncarriers respectively after atorvastatin treatment. The subjects with rs2036402TC genotype had lower TC and LDL-C levels than the subjects with rs2036402TT genotype after atorvastatin treatment. However, the subjects with rs1501908CC, rs12522248TT, and rs2036402TT genotypes had lower ApoA1 levels than the subjects with rs1501908CG/GG, rs12522248TC/CC and rs2036402TC/CC genotypes respectively after atorvastatin treatment. These results suggest that the TIMD4-HAVCR1 rs1501908G and rs12522248C allele carriers benefited more from atorvastatin therapy than the TIMD4-HAVCR1 rs1501908G and rs12522248C allele noncarriers in decreasing serum TC and LDL-C levels. But the subjects with rs1501908CC, rs12522248TT, and rs2036402TT homozygotes might have a detrimental effect by decreasing serum ApoA1 levels after atorvastatin treatment.

Study limitations
Although the present study provided interesting findings about the association of the TIMD4-HAVCR1 SNPs and serum lipid phenotypes and the risk of CHD and IS, several potential limitations should be acknowledged in the present study. First, the sample size was relatively small compared with many GWASs and replication studies. Therefore, further studies with larger sample size are needed to confirm our results. Second, there were significant differences in the general characteristics between the control and patient groups. Although several confounders have been adjusted for the statistical analysis, we could not completely eliminate the potential effects of these factors on the results. Third, the association of the three SNPs and serum lipid levels in the CHD and IS groups was not analyzed because of the interference of lipid-lowering drugs. Finally, it is well known that both CHD and IS are the complex multifactorial diseases that are caused by genetic factors, various environmental factors and their interaction. Although we have detected the association of three SNPs and their haplotypes in the TIMD4-HAVCR1 and the risk of CHD and IS, there are still many unmeasured environmental and genetic factors and their interactions, and this may result in some misinterpretation of our results.

Conclusion
In the present study, we showed that the genotypic and allelic frequencies of the rs12522248 SNP were different between controls and patients, and the genotypes of the rs12522248 SNP were associated with the risk of CHD and IS in different genetic models. Several SNPs and their haplotypes in controls were associated with TG (rs1501918), LDL-C (rs1501918, G-T-T), HDL-C (rs12522248, C-C-C), and the ratio of TC to HDL-C (C-C-C). Several SNPs and their haplotypes interacted with alcohol consumption, smoking and BMI ≥24 kg/m 2 to modify serum TC and HDL-C levels, and the risk of CHD and IS.