Prader–Willi Syndrome (PWS) is a rare complex genetic disease that is associated with pathological disorders that include endocrine disruption, developmental, neurological, and physical problems as well as intellectual, and behavioral dysfunction. In early stage, PWS is characterized by respiratory distress, hypotonia, and poor sucking ability, causing feeding concern and poor weight gain. Additional features of the disease evolve over time. These include hyperphagia, obesity, developmental, cognitive delay, skin picking, high pain threshold, short stature, growth hormone deficiency, hypogonadism, strabismus, scoliosis, joint laxity, or hip dysplasia. The disease is associated with a shortened life expectancy. There is no cure for PWS, although interventions are available for symptoms management. PWS is caused by genetic defects in chromosome 15q11.2-q13, and categorized into three groups, namely Paternal deletion, Maternal uniparental disomy, and Imprinting defect. PWS is confirmed through genetic testing and DNA-methylation analysis. Studies revealed that at least two key proteins namely MAGEL-2 and NECDIN along with two proteases PCSK1 and PCSK2 are linked to PWS. Herein, we summarize our current understanding and knowledge about the role of these proteins and enzymes in various biological processes associated with PWS. The review also describes how loss and/or impairment of functional activity of these macromolecules can lead to hormonal disbalance by promoting degradation of secretory granules and via inhibition of proteolytic maturation of precursor-proteins. The present review will draw attention of researchers, scientists, and academicians engaged in PWS study and will help to identify potential targets and molecular pathways for PWS intervention and treatment.

During the past several decades, a large number of review articles on Prader–Willi Syndrome (PWS) have been published in the literature describing various aspects of the disease [1–10]. Despite these publications that provided useful information and knowledge about the disease, there exist only a limited number that are focused specifically on key proteins and enzymes that are linked to various pathophysiologies of the disease [11–13]. The present review summerizes the latest research findings about the characterizations and implications of these proteins and enzymes in molecular and biochemical pathways of PWS leading to a range of pathological consequences. This summary will help to enhance our knowledge about the cause of pathophysiologies associated with PWS and assist in developing an effective therapeutic strategy for intervention of the disease. For a comprehensive evaluation, understanding and perspectives of the disease which is reflected from neonatal (sometimes even prenatal) period of the baby to adulthood and beyond [14–16]. With increasing age and growth of the baby, many complications and abnormalities develop that may include growth retardation, neurological impairment, behavior abnormality, as well as anomalies in physical stature and appearance. Extensive research in sixties and seventies revealed many details of these and additional health abnormalities with PWS patients (reviewed in [17]). Later on, additional studies were conducted that have enriched our understanding about the disease [1,2].

PWS was first officially described in the literature by three Swiss endocrinology doctors, Andrea Prader, Alexis Labhart, and Heinrich Willi in 1956 based on abnormal symptoms and clinical features of nine children patients who were under their care [18]. They are the first to observe the features, abnormalities, and health disorders that became the vital part of what is now known as PWS in medical world. It may be pointed out that nearly 70 years earlier back in 1887, Dr. Langdon-Down noticed in a girl patient several abnormal features such as mental impairment, short physical structure, hypogonadism, excessive feeding pattern, and high degree of obesity, which he termed as ‘Polysarcia’ [11]. Following their first report, Prader and his colleagues later described a series of patients with similar phenotypes. In the literature, it was also termed as HHHO (Hypogonadism, Hypotonia, Hypomentia, and Obesity) because of the presence of these hallmark features in these patients [19–21].

PWS occurs in one out of every 12000–15000 live births. There is considerable geographic variation. For example in the U.K., the incidence is the lowest as one in 52000 [22]. In the U.S.A., the average incidence ranges from one in 16000 to 25000 [23] depending on the region. In rural Sweden, the rate is very high with prevalence of one in 8000 [24]. On the contrary, it is one in 16000 in Japan [25]—almost the same as global average figure [26,27]. PWS affects both genders equally in terms of degree of severity, aggressiveness, display of symptoms, and fatality. At present, globally the total number of people affected by this disease per year varies roughly from 350000 to 400000 individuals.

The symptoms and severity of PWS can vary significantly from one individual to another. Many features of the disorder may develop slowly over time or can be subtle. It is important to note that affected individuals may not have all of the symptoms discussed below. PWS is typically identified in newborn period and is characterized by small for gestational, poor sucking, and hypotonia. Male infants with PWS may also show hypogonadism, genital hypoplasia, and undescended testes. As children grow, they develop symptoms of hyperphagia resulting in easy weight gain. The onset of hyperphagia most commonly begins between ages 2 and 8 years, but are variable in terms of onset and intensity. Individuals with PWS lack normal hunger and satiety cues, and food-seeking behaviors are very common. In addition, the metabolic rate of persons with PWS is lower than normal. Left untreated, this combination of problems leads to morbid obesity and its many complications. Children with PWS often exhibit global developmental delay, typically sitting by age 12 months and walking by 27–35 months. They may also experience delayed speech and speech apraxia. All PWS individuals exhibit some grade of cognitive challenges with measured IQs (Intelligence Quotients) ranging from low normal to moderate intellectual disability. They may also exhibit learning disabilities. In addition, they experience a variety of behavioral issues that include, skin picking, emotional dysregulation, aggressiveness, rigid attitudes, as well as manipulative and obsessive–compulsive behaviors. Adults with PWS are at increased risk for mental illness. Endocrine manifestations include growth hormone deficiency/short stature, hypothyroidism, adrenal insufficiency, and delayed puberty. From a respiratory perspective, sleep disturbances with excessive daytime sleepiness can occur. With the development of obesity, obstructive sleep apnea may occur. From an orthopedic perspective, due to joint laxity and hypotonia, ankle supports may be needed. They can also develop hip dysplasia and scoliosis. Due to dental crowding and decreased salivary flow, they are at higher risk of cavities, enamel hypoplasia, periodontal disease, delayed tooth eruption, candidiasis, and oral lesions. Data from the Global PWS Registry show that the most common vision issues in PWS are nearsightedness, and strabismus [27–31].

Genetic

Accumulated research, various clinical and medical studies revealed that PWS is caused by genetic aberration involving chromosome 15. Ledbetter and his group in 1981 first detected microdeletions within this chromosome at a specific site for PWS patients [5,32–34].

Classification of PWS

PWS has been classified into three separate categories based on abnormal genetic type.

  • Category-I: Paternal Deletion (PD): 65–70% of PWS patients have a deletion or missing of a segment in paternal chromosome 15 within the proximal long arm between q11.2–q13. (Figure 1). In normal circumstance, each parent transfers one copy of chromosome 15 to their offspring but in case of most PWS children, the father’s chromosome 15 q11.2-q13 segment is not transferred. In this genetic defect, there is complete interstitial deletion of q11.2-13 segment of father’s chromosome 15 (break points q11.2 and q13) in the offspring while the copy from mother is transferred normally and is fully turned on (active). This segment encompasses the region between break point (BP) hot spots BP1 and BP3 (about 6 Mb size). This is known as deletion of type-I. Alternatively in rare cases, there is a deletion of 5.3 Mb size encompassing the region between BP1 and BP2. In extremely rare cases, there is a deletion of only 118 Kb segment encoding the protein SNORD116. Some consider it as category IV of genetic defect of PWS, others place it in ‘PD’ category. It is also noted that father’s chromosome 15 is transferred with the segment q11.2-13 fully silenced (or turned off and hence inactive). In all cases, both parents are normal and the deletion occurred as a de novo event. Some studies suggest increased behavioral difficulties for Type 1 (completely deleted) compared with Type 2 deletion (silenced) patients [35,36].

  • Category-II: Maternal Uni-Parental Disomy (MUPD): In 25–30% cases of PWS, the individual inherits both copies of chromosome 15 from maternal source, instead of having one copy from father and one copy from mother. The chromosomal content is not altered in uniparental disomy and therefore disease may develop if the chromosome linked to the disomy contains ‘imprinted genes’, whose expression is highly gender-specific. Usually, both genes are ‘turned on’ meaning functionally active. However, some genes may be preferentially ‘turned off’ meaning silenced depending on which parent contributed the gene to the child (genetic imprinting). Genetic imprinting is controlled by chemical switches via DNA-methylation and other chemical changes at the DNA level. Correct genetic imprinting is crucial for normal growth and development of the baby. Defective imprinting is one of causes for PWS disorders. In general, older mothers are more probable to cause UPD than younger mothers and this could be related to the fact that older eggs are likely to have more errors in the chromosome [37]. At present, the exact reason for alteration of chromosome 15 is not known. It is also not understood whether the defect happens during egg or sperm production, maturation, or during the conception [38]. It may be pointed out that some kind of relation exists between the nature of genetic defect and the abnormalities. PWS patients having UPD exhibit a slightly improved mean intelligence quotient compared with those having deletion. They display milder behavioral abnormalities but are likely to display an enhanced degree of autistic features and mental retardation compared with deletion group. In general, these babies are born late.

  • Category-III: Imprinting Defect (ID): The remaining approximately 1–3% of PWS cases are due to defect in DNA-imprinting center (Figure 2). PWS individuals having defect in DNA-imprinting are more comparable with UPD group in terms of abnormalities [39,40].

  • In addition to above, genetic abnormalities of PWS, a small group shows a very rare type of deletion caused by ‘Chromosomal Translocation’. In this case, a segment of one chromosome breaks and becomes attached to another causing a rearrangement. In spite of all defective genetic scenarios as mentioned above, it is possible that within each defective genetic group, there can be significant phenotypic variation. Knowing the exact genetic defect of PWS individuals is not helpful in diagnosing the actual symptoms that may show up for any individual [41–46].

The karyotype image showing chromosomal abnormality in PWS disease

Figure 1
The karyotype image showing chromosomal abnormality in PWS disease

Note the red circle indicating that the defect lies with long-arm bands of chromosome 15. (Taken from: https://www.sciencephoto.com/media/1127811/view/karyotype-of-prader-willi-syndrome-illustration).

Figure 1
The karyotype image showing chromosomal abnormality in PWS disease

Note the red circle indicating that the defect lies with long-arm bands of chromosome 15. (Taken from: https://www.sciencephoto.com/media/1127811/view/karyotype-of-prader-willi-syndrome-illustration).

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Genetic classes of PWS and their average frequencies

Figure 2
Genetic classes of PWS and their average frequencies

Category I: PD; Category II: MUPD; Category III: ID. A fourth type (Category IV) caused by deletion of gene SNORD 116 (Type IV) is extremely rare. The figure represents chromosome 15. P indicates the paternally inherited chromosome 15, and M indicates the maternally contributed one. Type III occurs when there is biparental inheritance, but the paternally inherited chromosome 15 is imprinted in the manner typical of the maternal chromosome 15 (i.e., relevant genes are not expressed).

Figure 2
Genetic classes of PWS and their average frequencies

Category I: PD; Category II: MUPD; Category III: ID. A fourth type (Category IV) caused by deletion of gene SNORD 116 (Type IV) is extremely rare. The figure represents chromosome 15. P indicates the paternally inherited chromosome 15, and M indicates the maternally contributed one. Type III occurs when there is biparental inheritance, but the paternally inherited chromosome 15 is imprinted in the manner typical of the maternal chromosome 15 (i.e., relevant genes are not expressed).

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In order to better understand the molecular mechanism and pathophysiology of PWS, studies have been conducted to identify proteins that are encoded by the missing part of chromosome 15 and associated proteases. This part of the gene represents about 6 Mb (Mega bases, 1 Mb = 1000000 base pair) that comprises six small nucleolar RNA genes (which are noncoding) and six protein-coding genes. The associated coded proteins have been identified and these are: (i) Melanoma Antigen L-2 (MAGEL-2), (ii) NECDIN (NDN), (iii) Makorin Ring Finger Protein-3 (MKRN-3), (iv) Nuclear Pore Associated Protein-1 (NPAP-1), (v) Small Nuclear Ring Finger (SNURF), and (vi) Small Nuclear Ribonucleoprotein N (SNRPN) [47–50]. Among these proteins, MAGEL-2 and NECDIN have been strongly implicated in some of the pathophysiologies and abnormalities observed with PWS individuals. The rest of the proteins that also include IPW (ImPrinted gene in the Prader–Willi syndrome region) [51], PWRN1 (Prader–Willi Region Non-protein coding RNA-1) [52], SNORD-116 (Small NucleOlar RNA, C/D box 116) (53) have been either proposed or inadequately linked to some conditions like neurological abnormalities of PWS based on limited clinical and/or model animal studies. In particular, microdeletion in SNORD-116 may be linked to PWS conditions of some individuals but not for others [53].

Proteins

MAGEL-2:

MAGEL-2 along with NECDIN are key cellular proteins that have been strongly linked to appetite disbalance observed with PWS patients. Studies have indicated that lack or absence of these proteins is the primary cause for uncontrolled appetite and excessive overeating behavior of PWS individuals. it has been established by a number of in vitro, in vivo and animal knock out studies that these proteins enhance the level of leptin receptor on the cell surface via ubiquitination pathways [54,55]. MAGEL-2 null mice are obese and do not respond to leptin in hypothalamic pro-opiomelanocortin neurons, suggesting dysregulation of leptin receptor activity. Research also showed that MAGEL-2 knockout mice display a much reduced level of leptin receptor in their hypothalamus and altered expressions of several key proteins like RNF-41 (E3 ubiquitin ligase RING finger protein-41), USP-8 (Ubiquitin-specific protease 8), and STAM-1 (Signal-Transducing Adapter Molecule), which are associated with ubiquitination pathway that controls the activity of leptin receptor. MAGEL-2 helps to promote the level of cell surface leptin receptor by protecting its degradation. Leptin receptor binds with MAGEL-2 via NECDIN and forms a multiprotein complex with RNF-41 and USP-8. It is also noted that several loss of function mutant variants of MAGEL-2, which suppress its binding with RNF-41, decreases leptin receptor level leading to increased appetite. The above biochemical pathway is depicted in a simple visual schematic manner in Figure 3. The figure shows how loss of MAGEL-2 function or its absence may cause alterations in the abundance and ubiquitination of proteins involved in internalization pathway of leptin receptor. The proteins affected are shown in red color (right panel of Figure 3). Human (h) MAGEL-2 belongs to MAGE (Melanoma Antigen Gene) family proteins that are known to control functional activity of ubiquitin ligase. This family of proteins are also described as tumor-associated antigens and consist of >60 genes, which share a conserved MAGE homology domain. They play role in normal development and tumor progression, being found to be highly expressed in cancer tissues [56]. This is linked to dysregulation of ubiquitin pathway as mentioned above. hMAGE-2 is a 1249 amino acid (aa) long protein that contains a number of characteristic domains as described in Figure 4. The protein contains a Proline-Rich Domain’ (PRD 13aa-700aa), ‘USP7 Binding Segment’ (U7BS 949aa-1004aa) (deubiquitinating enzyme), and the crucial ‘MAGE Homology Domain’ (MHD: 1020aa-1219aa) [57]. The most critical domain of interest for MAGEL-2 is U7BS via, which it interacts with USP7. A number of truncating variants of MAGEL-2 due to frameshift and nonsense mutations have been reported that are likely responsible for various neurological and related anomalies found in SYS (Schaf–Yang Syndrome) [57], PWS and other related diseases. These truncations occur around amino acid position approximately 666 as shown in the figure. Most observed mutations have been reported within PRD domain near its C-terminal region (653aa-708aa). The next most hotspot mutation sites are located in MHD followed by U7SB domains (Figure 4). It is interesting to note that mouse MAGEL-2 does not contain any U7SB domain—unlike in human and its impact is not clear.

Schematic diagram showing the regulation of leptin receptor activity mediated by MAGEL-2
Figure 3
Schematic diagram showing the regulation of leptin receptor activity mediated by MAGEL-2

The panel on the left shows how MAGEL-2 participates in the biological pathway to keep appetite under balance. The panel on the right indicates the effect when MAGEL-2 is absent or silenced. Loss of MAGEL-2 causes change in ubiquitination of proteins in leptin receptor internalization pathway, with affected proteins outlined in red (right). Proteins are labeled as follows: leptin (L), leptin receptor (LR), SH2B1 (S), IRS4 (I), NECDIN (N), MAGEL-2 (M), phosphatidylinositol-3 kinase (PI3K), RNF41 (R), USP8 (U8), Stam1 (St). MAGEL-2 and NECDIN in combination regulate LR sorting and degradation through a dynamic ubiquitin-dependent pathway. Loss of either of these proteins may uncouple LR from ubiquitination pathways, providing a mechanism for obesity in PWS.

Figure 3
Schematic diagram showing the regulation of leptin receptor activity mediated by MAGEL-2

The panel on the left shows how MAGEL-2 participates in the biological pathway to keep appetite under balance. The panel on the right indicates the effect when MAGEL-2 is absent or silenced. Loss of MAGEL-2 causes change in ubiquitination of proteins in leptin receptor internalization pathway, with affected proteins outlined in red (right). Proteins are labeled as follows: leptin (L), leptin receptor (LR), SH2B1 (S), IRS4 (I), NECDIN (N), MAGEL-2 (M), phosphatidylinositol-3 kinase (PI3K), RNF41 (R), USP8 (U8), Stam1 (St). MAGEL-2 and NECDIN in combination regulate LR sorting and degradation through a dynamic ubiquitin-dependent pathway. Loss of either of these proteins may uncouple LR from ubiquitination pathways, providing a mechanism for obesity in PWS.

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Schematic structure of human (h)MAGEL-2 (ACCESSION NO: NP_061939) and mouse (m)MAGEL-2 (ACCESSION NO: NP_038807, XP_622091)
Figure 4
Schematic structure of human (h)MAGEL-2 (ACCESSION NO: NP_061939) and mouse (m)MAGEL-2 (ACCESSION NO: NP_038807, XP_622091)

Upper Panel: Human MAGEL-2 contains a proline-rich domain (PRD: residues 13–700), USP7-binding segment (U7BS: residues 949–1004), and MAGE homology domain (MHD: residues 1020–1219). A number of truncating variants of hMAGEL-2 have been reported. These (frameshift and nonsense variants) are mostly located in PRD, followed by MHD and U7BS domains. The mutation hotspot is located at nucleotides residue 666aa. Lower Panel: Mouse MAGEL-2 contains proline-rich region (residues 13–646) and MHD (residues 1059–1223) but no U7BS domain.

Figure 4
Schematic structure of human (h)MAGEL-2 (ACCESSION NO: NP_061939) and mouse (m)MAGEL-2 (ACCESSION NO: NP_038807, XP_622091)

Upper Panel: Human MAGEL-2 contains a proline-rich domain (PRD: residues 13–700), USP7-binding segment (U7BS: residues 949–1004), and MAGE homology domain (MHD: residues 1020–1219). A number of truncating variants of hMAGEL-2 have been reported. These (frameshift and nonsense variants) are mostly located in PRD, followed by MHD and U7BS domains. The mutation hotspot is located at nucleotides residue 666aa. Lower Panel: Mouse MAGEL-2 contains proline-rich region (residues 13–646) and MHD (residues 1059–1223) but no U7BS domain.

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It is observed that inactivation (part or complete) of MAGEL-2 or lack of it occurs in people with Prader–Willi Syndrome, Schaaf-Yang syndrome, Arthrogryposis, or Opitz-C Syndrome, all of which display some common symptoms such as excessive feeding pattern and massive obesity. Therefore, they are likely to have disruption in their molecular pathway associated with hunger and appetite. This observation is highly significant for PWS where MAGEL-2 is missing in most individuals (particularly the PD or Parental Deletion type). It is now well established that MAGEL-2 not only functions in cancer but also mediates in endosomal trafficking of 500 kDa protein called ‘WASH complex’ that includes a variety of proteins such as WASH1 (Wiskott Aldrich Syndrome 1), FAM21 (which contains 21 copies of a novel amino acid motif: ‘L-F-[D/E]3-10-L-F’), Strumpellin, SWIP (Strumpellin and WASH-Interacting Protein), and CCDC53 (Coiled Coil Domain Containing p53). This complex prevents lysosomal degradation of SG (Secretory Granule) and dense SG (type of organelles) proteins [57]. The formation of this multiprotein complex is responsible for routing the protein to endosomal pathway. Lack of any of these proteins, especially MAGEL-2 will promote destruction key proteins via lysosomal pathway. In PWS, the loss of MAGEL-2 leads to reduced production of neuropeptide such as Oxytocin (Oxt), Arginine-vasopressin (Avp), and Somatostatin (Sst) (stored in SG)—which is the cause of hormonal related neurological and intellectual disbalance. Degradation of other hormones such as growth hormone, luteinizing hormone, thyrotropin-releasing hormone, proenkephalin, chromogranins, and prolactin, which rely on neurosecretory input from the hypothalamus also, occurs leading many neurological and other distress seen in PWS patients. This conclusion is consistent with the observation that SG and neuropeptide abundance are significantly altered in MAGEL-2 knockout mice [55]. It is thus concluded that MAGEL-2 plays a significant major role in hypothalamic neuroendocrine function and cellular disturbance. Its deficiency disrupts this event and thereby contributes to PWS pathophysiology [58]. Two key pathways involving MAGEL-2 have been described. One involves SG containing hormone pathway and the other leptin-associated hunger pathway as shown in the figure, causing hormonal disbalance and excessive appetite pattern as observed with PWS patients (Figures 3 and 5). It is now evident that the normal function of MAGEL-2 is to keep the general maintenance and activity in the cell under control. Overall, it acts as an important part of a large protein complex recycling of vesicles in the cell in right direction. This allows receptors, signaling molecules, hormonal and neuronal peptides, as well as other proteins to be stored in vesicles and trafficked to the right places. This is disrupted in PWS due to silencing or deletion of MAGEL-2 [59].

Biochemical pathway showing the role of MAGEL-2 mediated WASH complex in SG (Secretory granuke) routing and potential implication
Figure 5
Biochemical pathway showing the role of MAGEL-2 mediated WASH complex in SG (Secretory granuke) routing and potential implication

Left: Schematic diagram showing the pathways of protein sorting to SG via endosomal pathway and WASH complex in presence of MAGEL-2 protein. Right: Shows the pathway of WASH complex via degradative lysosomal pathway when MAGEL-2 is absent or silenced. The abbreviations of various proteins in WASH complex are indicated on the right side of the figure. Abbreviations: C: cargo; En: endosome; L: lysosome; Nu: nucleus; PM: plasma Membrane; TGN: trans Golgi network.

Figure 5
Biochemical pathway showing the role of MAGEL-2 mediated WASH complex in SG (Secretory granuke) routing and potential implication

Left: Schematic diagram showing the pathways of protein sorting to SG via endosomal pathway and WASH complex in presence of MAGEL-2 protein. Right: Shows the pathway of WASH complex via degradative lysosomal pathway when MAGEL-2 is absent or silenced. The abbreviations of various proteins in WASH complex are indicated on the right side of the figure. Abbreviations: C: cargo; En: endosome; L: lysosome; Nu: nucleus; PM: plasma Membrane; TGN: trans Golgi network.

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NECDIN

The second most important protein associated with PWS is NECDIN (NDN). This is a DNA-binding protein that helps in the maturation and activation of neurons following termination of cell division and elevation of axonal outgrowth [60]. This is facilitated via its interaction with a number of key partner proteins that include NGF (Nerve Growth Factor), MAGEH-1 (Melanoma Associated Antigen Family H-1) and MAGEL-2. This helps to protect from degradation the protein FEZ-1 (Fasciculation and Elongation Zeta 1) protein, which stimulates axonal outgrowth [61]. NDN is likely associated with hypogonadotropic hypogonadism condition as observed in PWS patients. It is needed for the function of neurons associated with GnRH (gonadotropin releasing hormone). Deficiency, absence, or silencing of NDN is the primary cause of PWS etiology linked to hypogonadism observed with adolescent PWS children. In this case, sex glands (called gonads) are underdeveloped and generate little or no sex hormones. Overall speaking, it is now established that NDN plays role in intracellular processes associated with neurite outgrowth and negative regulation of axonal outgrowth, migration, and survival of Embryonic Sympathetic Neurons. Human NECDIN is a 321 aa long nuclear protein that belongs to MAGE family protein. The region encompassing the residues from 105aa to 273aa has been identified as the MAGE Homology Domain (MHD)—a domain characteristic of all MAGE proteins (Figure 6A) [62]. Its difference in structure from corresponding mouse NECDIN, which is lacking U7SB domain is noticeable in the figure.

Amino sequences of human NECDIN, human MKRN-3 and human NPAP-1 in schematic forms showing their various characteristic domains
Figure 6
Amino sequences of human NECDIN, human MKRN-3 and human NPAP-1 in schematic forms showing their various characteristic domains

(A) Schematic diagram showing the structure of human NECDIN protein (ACCESSION number: NP_002478) with its various characteristic domains. Disordered: 1–96; MAGEL homology domain (MHD): 105–273. (B) Schematic diagram showing the structure of human MKRN-3 (Makorin Ring Finger Protein-3) (ACCESSION number: AAH44639); Disordered: 1–33; DNA polymerase III subunit γ and τ domain III: 34–232: Zinc-finger domain: 95–121: Makorin-type Cys–His domain: 266-–293: Zinc-binding segment: 311-364, (Sites: 311, 314, 335, 337, 340, 343, 361, 364); E3 ubiquitin-protein ligase makorin-1: 439–505. (C) Schematic diagram showing the structure of human NPAP-1 protein (ACCESSION number: NP_061831) with various characteristic domains. Regions of interest: 1-–60; 219–266; 481-–515; 680–703; 872–915; 1026-–1046. POM-121 family domain: 154–383.

Figure 6
Amino sequences of human NECDIN, human MKRN-3 and human NPAP-1 in schematic forms showing their various characteristic domains

(A) Schematic diagram showing the structure of human NECDIN protein (ACCESSION number: NP_002478) with its various characteristic domains. Disordered: 1–96; MAGEL homology domain (MHD): 105–273. (B) Schematic diagram showing the structure of human MKRN-3 (Makorin Ring Finger Protein-3) (ACCESSION number: AAH44639); Disordered: 1–33; DNA polymerase III subunit γ and τ domain III: 34–232: Zinc-finger domain: 95–121: Makorin-type Cys–His domain: 266-–293: Zinc-binding segment: 311-364, (Sites: 311, 314, 335, 337, 340, 343, 361, 364); E3 ubiquitin-protein ligase makorin-1: 439–505. (C) Schematic diagram showing the structure of human NPAP-1 protein (ACCESSION number: NP_061831) with various characteristic domains. Regions of interest: 1-–60; 219–266; 481-–515; 680–703; 872–915; 1026-–1046. POM-121 family domain: 154–383.

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MKRN-3

MKRN-3 is a zinc finger protein that is specifically linked to puberty regulation in adolescent males and females. It likely plays role in sex hormones (androgens, estrogens, and progesterone) expression and regulation. Lack of this protein may cause improper genital development and/or late puberty for PWS adolescent individuals. However, the exact mechanism and biological pathway remain unclear. It is interesting to note that frameshift mutations leading to its truncation along with missense mutations have been found in individuals who exhibit central precocious puberty similar to that noted with PWS patients [63]. The involvement of MKRN3 gene and associated protein has been proposed based on observed phenotypes upon its loss of expression or its complete deletion. Thus, it is evident that missing or silencing of MAGEL-2 and NDN alone is not sufficient to explain all the phenotypes of PWS individuals [64]. Human MKRN-3 is a 507 aa long protein that has multiple domains including the most important Zn+2-binding sites, which comprise residues from 311aa to 364aa (see Figure 6B). So far studies revealed that absence or silencing of this protein is the primary cause for defects and anomalies in reproductive function and organ development seen with adolescent PWS individuals [65].

NPAP-1

NPAP-I or nuclear pore-associated protein-1 is a paternally expressed imprinted gene located in the region between q11–q13 of chromosome-15. Since PWS originates from the deletion or functional loss of same segment of human genome, it is suggested that NPAP-1 protein may be implicated in some anomalies found in PWS individuals. The mechanism and the details of imprinting consequences of this protein is not fully understood. A thorough investigation on the evolutionary origin of this protein established that the gene is explicit to primates and are absent from chromosome-15 q11–q13-orthologous regions in all nonprimate mammals [54]. Human NPAP-1 protein is a large 1156aa long protein that contains a characteristic POM-121 family domain segment. It also contains seven domains as indicated, which are considered as segments of interest (Figure 6C). This protein belongs to a POM-121-related family of retrogenes. Retrogene is a processed copy of another gene and is usually nonfunctional, inactive, and regarded as biologically insignificant segments [66,67].

SNRPN and SNURF

The full-length original gene SNRPN, abbreviated for Small Nuclear Ribonucleoprotein Polypeptide N, represents two specific functional proteins encoded by the genes SNURF short for SNRPN Upstream Reading Frame and SNRPN. These two are separated by a noncoding segment of nearly 600 kb in size, termed as SNHG-14 (Small Nuclear Host Gene-14). The biological role of SNURF protein that consists of first three exons 1–3 in PWS is not fully understood. In contrast, SNRPN that contains exons 4–10 produces a nonessential protein called SMN (Survival Motor Neuron), which plays important role in mRNA splicing [68]. It has been suggested that SNHG-14 induces the upstream exons of SNRPN gene and encompasses a range of RNA segments that display a wide variety of putative functions. In particular, two snoRNAs (small nucleolar RNAs) have been described that are generated via activation mediated by SNHG-14. Moreover, another noncoding RNA molecule called SNORD-116 (Small Nucleolar RNA of C/D box type) has been described that regulates other approximately 12 snoRNAs (mostly 150 nucleotides in size). SNORD-116 is strongly expressed in brain tissues in normal individuals but is lacking in PWS patients suggesting its strong linkage to PWS. In fact, its absence has been implicated to several key abnormalities of PWS patients such as feeding difficulties during infancy, weight gain after 2 years of age, extreme appetite, and developmental defect [69].

Epigenetic cause

Studies have shown that PWS syndromes are also linked to epigenetic regulation of chromosome 15 locus 15q11-q13. Thus, understanding the mechanism of repression of this locus inherited from mother is key from point of view of therapeutic intervention of PWS. A significant number of PWS individuals do not have the paternal 15q11-q13 locus but inherit the same intact from mother that remains epigenetically silent. Gene expression at this locus is mostly regulated by PWS-IC (Prader–Willi Syndrome Imprinting Center). This is described as the master regulator of MAGEL-2, MKRN-3, and NDN proteins, which remain unmethylated in paternal allele but is likely methylated in maternal allele. This differential methylation occurred in the germline as the result of transcriptional activation of an oocyte-specific promoter(s) upstream of SNRPN. This mechanism establishes the original silencing of maternal chromosome. Recently, the existence of separate somatic imprints in this silencing activity has been uncovered [70,71]. The epigenetic DNA-methylation that is mediated by DNA methyltransferase enzyme has been considered as a therapeutic target for possible management of PWS. The first proof of principle of this approach was obtained when it was shown that a DNA methyltransferase inhibitor, ‘5-azadeoxycytidine’ was able to demethylate the PWS-IC leading to activation of the maternal genes. Therefore, activation of the normally silent such maternal gene inhibitory compound may offer a potential therapeutic intervention and treatment for PWS patients [70,71]. Recently, a protein named ‘ZNF-274’ (Zinc Finger Protein 274) that contains five Zinc-finger domains has been identified [72], which plays important role in the suppression of maternal chromosome-15q11-q13 allele. It forms a silencing complex with other key proteins such as SETDB1 and is associated with enhanced expression in maternal allele. The study results support the notion that ZNF274 recruits SETDB1 to maternal SNORD116, where it deposits another protein H3K9me3 and contributes to repression of the maternal allele. ZNF-274 knock study provided additional support for this hypothesis [73,74].

Proteases of PWS and their defects

PCSK1, PCSK2, and CPE

One key aspect of PWS is the significant loss of Secretory Granules (SG), which are large dense core vesicles and specialized intracellular organelles. SGs store many endocrine hormones and neuronal polypeptides in their active forms following their proteolytic processing. They are synthesized in ER (Endoplasmic Reticulum), travel through TGN (Trans Golgi Network) apparatus where change of pH and proteolytic activation take place. Following maturation, they are packaged and stored in SG before secretion. Following signal and stimulation, these bioactive hormones and neuropeptides are released either in regulated or in constitutive pathway. PWS individuals lack many of these key hormones and neuropeptides as SGs are gradually destroyed and this is the primary cause for many of the observed symptoms and abnormalities of PWS. It was also noted that in PWS there is not only degradation of SGs but there is also significant lack of maturation of inactive precursor prohormones, proproteins, and proneuropeptides. This is due to reduced level of any one of the three enzymes that include Proprotein Convertase Subtilisin Kexin type 1 and type 2 (PCSK1 and PCSK2) (reviewed in [75,76]) as well as Carboxy Peptidase E (CpE) [77]. This caused decreased processing of proneuropeptides and prohormones to the corresponding mature active forms. The loss or impaired protease activity of PCSK1 (known as PC1 at that time) in particular has been reported in human and this led to high appetite causing obesity and diabetes [78]. This finding is also confirmed by studies involving PCSK1 knockout mice models (reviewed in [78,79]). Both PCSK1 and PCSK2 belong to the same PCSK enzyme family and are mostly present in endocrine tissues including brain. The characteristic structural features, the crucial catalytic domain with key amino acid residues [Asp (D), His (H), and Ser (S)] responsible for the protease activity along with other domains of PCSK1 and PCSK2 are shown in Figure 7. So far impaired PCSK1 activity has been strongly linked to Prader–Willi Syndrome and associated childhood obesity [80]. However, the precise cause of impairment is not clear, although later on it was linked to mutation of catalytic residue/s. The other possibility is down-regulation of PCSK1 expression due to reason not yet understood.

Schematic diagram showing the characteristic domains including the key catalytic, pro, and other domains of human PCSK1 and PCSK2 enzymes
Figure 7
Schematic diagram showing the characteristic domains including the key catalytic, pro, and other domains of human PCSK1 and PCSK2 enzymes

The domains are compared with the corresponding bacterial subtilisin and yeast (y) kexin enzymes (shown on the top panel). The key catalytic amino acid residues, D (Asp), H (His), S (Ser), and N (Asn) are depicted in the figure.

Figure 7
Schematic diagram showing the characteristic domains including the key catalytic, pro, and other domains of human PCSK1 and PCSK2 enzymes

The domains are compared with the corresponding bacterial subtilisin and yeast (y) kexin enzymes (shown on the top panel). The key catalytic amino acid residues, D (Asp), H (His), S (Ser), and N (Asn) are depicted in the figure.

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Consistent with this finding, previous studies indicated reduced hormone processing activity in MAGEL-2-deficient mice, including significantly low level of active orexin (A hormonal neuropeptide that regulates arousal, wakefulness, and appetite) in circulation. Hormone imbalance such as increased unprocessed precursor proteins such as pro-orexin, diminished expression of oxytocin, and decreased production of growth hormones are all associated with PWS. These are likely instigated by impaired protease activity of PCSK1 enzyme. The same reasoning may also hold true for reduction in secreted insulin level in blood for PWS deletion model mouse [64]. Similar findings were also noted in humans, where PWS patients were found to exhibit much reduced levels of hormones like vasopressin and oxytocin. Improper and defective processing of neuropeptides and their secretion are consistent with hormonal imbalance noted in PWS individuals. This contributes to various conditions of PWS such as hyperphagic obesity, hypogonadism, growth hormone deficiency, hyperghrelinemia, and hypoinsulinemia. In agreement with the above notion of reduced production of neuropeptides in PWS as well as in MAGEL-2 knockout model animals, an administration by injection of oxytocin in postnatal condition is able to rescue serious feeding behavior in MAGEL-2-knockout mice [79,80]. MAGEL-2 null mice phenotypes are in consistent with many PWS features. The lack of prohormone processing in PWS individuals is in line with that observed during experiments with MAGEL-2 null mice where distinct abnormality in SG in hypothalamic tissues has been observed. A detail proteomics analysis of knockout tissues demonstrated reduced levels of important neuropeptides such as Oxt (Oxytocin), Avp (Arg-vasopressin), and Sst (Somatostatin). Latter observation has been linked to neurological abnormality in PWS individuals [1–5]. Moreover, null pituitary tissues showed diminished levels of GH (growth hormone), LH (luteinizing hormone), and prolactin, which are implicated in neurosecretion [81]. Since hypothalamus/pituitary axis may regulate function of other tissues, therefore, associated organs may be indirectly affected by the absence of MAGEl-2. Experiments revealed improper regulation of metabolic genes in liver and white adipose tissues in MAGEL-null mice compared with control. Thus, in conclusion, it was stated that SG and neuropeptides are substantially diminished in null mice—a reminiscent of PWS in human.

The role of three key enzymes PCSK1, PCSK2, and CpE in hormone production and maturation has been well documented in the literature by a large number of studies (reviewed in [81]). This is explained in a schematic manner in Figure 8, using the maturation process of a typical brain protein, POMC (Pro Opio Melano Corticoid) that generates a variety of active hormones via the conserted actions of PCSK1, PCSK2, and CpE [77]. It is therefore understandable why impaired activities of any one of these enzymes can lead to decreased levels of key hormones and neuropeptides [82]. This is one of the crucial findings for the cause of PWS disease and the associated various observed symptoms and functional abnormalities. So far deficiency of PCSK1 gene and its coded protein (enzyme) activity has been confirmed in Prader–Willi Syndrome disease and associated obesity [80,81]. So far it is not fully known what causes reduced activities of PCSK1 and possibly PCSK2 and CpE in PWS patients. It could be plausible that some of the proteins encoded by the deleted segment of chromosome-15 may affect in a negative manner (down-regulate) the activity of the enzymes, especially PCSK1 whose deficiency has been already linked to many PWS-associated abnormalities [78,83,84].

POMC maturation via the proteolytic actions of enzymes PCSK1, PCSK2 and CpE
Figure 8
POMC maturation via the proteolytic actions of enzymes PCSK1, PCSK2 and CpE

Schematic presentation of POMC (Pro-opiomelanocorticoid) cleavages by PCSK1 and /2 at single and paired basic amino acid residues (K/R), leading to the formation of various bioactive peptides like β-MSH, α-MSH, β-LPH, ACTH, γ-MSH, etc. where CpE (Carboxy peptidase E) also plays a critical role in the maturation process by cleaving off the excess basic residues at the C-terminus to generate ultimately the active hormonal peptide. (sp: signal peptide; R: arginine; K: lysine).

Figure 8
POMC maturation via the proteolytic actions of enzymes PCSK1, PCSK2 and CpE

Schematic presentation of POMC (Pro-opiomelanocorticoid) cleavages by PCSK1 and /2 at single and paired basic amino acid residues (K/R), leading to the formation of various bioactive peptides like β-MSH, α-MSH, β-LPH, ACTH, γ-MSH, etc. where CpE (Carboxy peptidase E) also plays a critical role in the maturation process by cleaving off the excess basic residues at the C-terminus to generate ultimately the active hormonal peptide. (sp: signal peptide; R: arginine; K: lysine).

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The future direction of PWS research is directed toward gene therapy. Current research is more focused in finding means to activate (turn on) the ‘silent genes’ on the maternal chromosome 15 (l). Understanding how proteins function and interact is important in this event. This is expected to open up a new horizon for more effective treatment and possibly a cure for PWS disease in the future. In the past, the treatment was directed toward supplementing the hormones, growth factors, and other bioactive peptides as nicely summarized in a recent review by Chung et al. [9].

Recent and past studies have led to enhancement of our understanding about PWS disease, its progress mechanism, various symptoms, and abnormalities. However, this disease with multifaceted symptoms that appear at various stages of its progression poses a serious challenge to researchers and scientists. The research in this field is constantly evolving and bringing in new information. Understanding the molecular pathways and identification of associated biomolecules and proteins/enzymes as well as their role are all critical part of the the disease and may be considered as possible targets for therapeutic intervention of PWS. This review summerizes the role of various key proteins and enzymes and how their lack or impaired activity can lead to defects in development, growth, appetite, metabolism, hormonal balance, endocrine, and gonad functions. Among the proteins, the functional properties of MAGEL-2 and NDN are most critical while among the proteases, PCSK1 activity is the major determinant although the impairment of other enzymes such as PCSK2 and CpE in PWS cannot be ruled out [85]. Current advancements and discoveries in gene therapy research is highly encouraging and is expected to provide hopes for better treatment of PWS individuals in coming future.

The authors declare that there are no competing interests associated with the manuscript.

Sanjukta Basak: Resources, Writing—review & editing. Ajoy Basak: Conceptualization, Writing—original draft, Writing—review & editing.

A.B. is thankful to Dr. Vidya. Nair, Chair, Pathology and Laboratory Medicine, Faculty of Medicine, U Ottawa, Canada, for her continued support. The authors are also thankful to Global Prader–Willi Syndrome registry (www.pwsregistry.org) (for useful information), which has been launched in 2015 by the Foundation for Prader–Willi Research (FPWR) with the aim of finding a cure and/or efficient treatment for PWS individuals.

Aa

Amino acid

Avp

Arginine vasopressin

BP

Break point

CCDC53

Coiled Coil Domain Containing p53

CpE

Carboxy peptidase

GH

Growth hormone

h

Human

HHHO

Hypogonadism, Hypotonia, Hypomentia, and Obesity

ID

Imprinting defect

IPW

ImPrinted gene in the Prader–Willi syndrome region

LH

Luteinizing hormone

LR

leptin receptor

MAGE

Melanoma Antigen Gene

MAGEL-2

Melanoma Antigen L-2

MHD

MAGE homology domain

MKRN-3

Makorin Ring Finger Protein-3

MUPD

Maternal uniparental disomy

NDN

NECDIN

NPAP-1

Nuclear Pore Associated Protein-1

Oxt

Oxytocin

PCSK1/2

Proprotein Convertase Subtilisin type 1/2

PD

Paternal deletion

POMC

Pro-opiomelano corticoid

PRD

Proline-rich domain

PWRN-1

Prader–Willi Region Non-protein coding RNA-1

PWS

Prader–Willi Syndrome

RNF-41

E3 ubiquitin ligase RING finger protein-41

SG

Secretory granule

SNORD-116

Small NucleOlar RNA, C/D box 116

snoRNA

Small nuclear RNA

SNRPN

Small Nuclear Ribonucleoprotein N

SNURF

Small Nuclear Ring Finger

Sst

Somatostatin

STAM-1

Signal-Transducing Adapter Molecule

SWIP

Strumpellin and WASH-Interacting Protein

SYS

Schaf-Yang Syndrome

USP-8

Ubiquitin-specific protease 8

ZNF-274

Zinc Finger Protein 274

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