Gene expression must be co-ordinated to cellular activity. From transcription to decay, the expression of millions of RNA molecules is highly synchronized. RNAs are covered by proteins that regulate every aspect of their cellular life: expression, storage, translational status, localization, and decay. Many RNAs and their associated regulatory proteins can coassemble to condense into liquid droplets, viscoelastic hydrogels, freeze into disorganized glass-like aggregates, or harden into quasi-crystalline solids. Phase separations provide a framework for transcriptome organization where the single functional unit is no longer a transcript but instead an RNA regulon. Here, we will analyze the interaction networks that underlie RNA super-assemblies, assess the complex multiscale, multiphase architecture of the transcriptome, and explore how the biophysical state of an RNA molecule can define its fate. Phase separations are emerging as critical routes for the epitranscriptomic control of gene expression.
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December 2020
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Arginine-rich dipeptide repeat proteins (R-DPRs) disrupt various phase-separated compartments in neurodegenerative disease. In this special Phase Transitions issue of Emerging Topics in Life Sciences, Odeh and Shorter discuss the therapeutic strategies utilised to combat the deleterious effects of R-DPRs. These include the use of small molecule inhibitors, antisense oligonucleotides (ASOs), antibody immunotherapy (anti-DPRs), and “bait” RNAs. Find out more on pages 293–305.
Review Article|
June 16 2020
The multiscale and multiphase organization of the transcriptome Available to Purchase
Danielle A. Adekunle
;
Danielle A. Adekunle
1Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, U.S.A.
2Department of Molecular Genetics and Microbiology, UF Genetics Institute, Center for Neurogenetics, University of Florida, Gainesville, FL, U.S.A
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Arnaud Hubstenberger
3Université Côte D'Azur, CNRS, Inserm, iBV, Nice, France
Correspondence: Arnaud Hubstenberger ([email protected])
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Publisher: Portland Press Ltd
Received:
April 06 2020
Revision Received:
May 08 2020
Accepted:
May 18 2020
Online ISSN: 2397-8562
Print ISSN: 2397-8554
© 2020 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society and the Royal Society of Biology
2020
Emerg Top Life Sci (2020) 4 (3): 265–280.
Article history
Received:
April 06 2020
Revision Received:
May 08 2020
Accepted:
May 18 2020
Citation
Danielle A. Adekunle, Arnaud Hubstenberger; The multiscale and multiphase organization of the transcriptome. Emerg Top Life Sci 11 December 2020; 4 (3): 265–280. doi: https://doi.org/10.1042/ETLS20190187
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