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Articles

Analytical methods for quantitating sulfate in plasma and serum

Prasidhee Vijayakumar, Paul A. Dawson
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (4): 383–389.
https://doi.org/10.1042/EBC20230092
Published: 04 December 2024
View article titled, Analytical methods for quantitating sulfate in plasma and serum
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Articles

Chemical approaches to the sulfation of small molecules: current progress and future directions

Jaber A. Alshehri, Alan M. Jones
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (4): 449–466.
https://doi.org/10.1042/EBC20240001
Published: 04 December 2024
View article titled, Chemical approaches to the sulfation of small molecules: current progress and future directions
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Articles

Quantification of persulfidation on specific proteins: are we nearly there yet?

Hongling Liu, Florentina Negoita, Matthew Brook, Kei Sakamoto, Nicholas M. Morton
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (4): 467–478.
https://doi.org/10.1042/EBC20230095
Published: 04 December 2024
View article titled, Quantification of persulfidation on specific proteins: are we nearly there yet?
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Articles

Sulfate: a neglected (but potentially highly relevant) anion

Emil den Bakker, Desiree E.C. Smith, Martijn J.J. Finken, Mirjam M.C. Wamelink, Gajja S. Salomons, Jiddeke M. van de Kamp, Arend Bökenkamp
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (4): 391–399.
https://doi.org/10.1042/EBC20230097
Published: 04 December 2024
View article titled, Sulfate: a neglected (but potentially highly relevant) anion
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Articles

Malate dehydrogenase as a multi-purpose target for drug discovery

Charles S. Fermaintt, Sarah A. Wacker
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (2): 147–160.
https://doi.org/10.1042/EBC20230081
Published: 03 October 2024
View article titled, Malate dehydrogenase as a multi-purpose target for drug discovery
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Articles

Phosphorylation of mammalian cytosolic and mitochondrial malate dehydrogenase: insights into regulation

Joseph J. Provost, Kathleen A Cornely, Pamela S. Mertz, Celeste N. Peterson, Sophie G. Riley, Harrison J. Tarbox, Shree R. Narasimhan, Andrew J Pulido, Amy L. Springer
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (2): 183–198.
https://doi.org/10.1042/EBC20230079
Published: 03 October 2024
View article titled, Phosphorylation of mammalian cytosolic and mitochondrial malate dehydrogenase: insights into regulation
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Articles

Exploring the uncharted territory of the potential protein–protein interactions of cytosolic malate dehydrogenase

Joseph J. Provost, Amy D. Parente, Kristin M. Slade, Thomas J. Wiese
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (2): 83–97.
https://doi.org/10.1042/EBC20230083
Published: 03 October 2024
View article titled, Exploring the uncharted territory of the potential protein–protein interactions of cytosolic malate dehydrogenase
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Articles

Physiology of malate dehydrogenase and how dysregulation leads to disease

Amy D. Parente, Danielle E. Bolland, Kathryn L. Huisinga, Joseph J. Provost
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (2): 121–134.
https://doi.org/10.1042/EBC20230085
Published: 03 October 2024
View article titled, Physiology of malate dehydrogenase and how dysregulation leads to disease
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Articles

Innovate and empower: the malate dehydrogenase course-based undergraduate research experiences and community of practice

Sue Ellen DeChenne-Peters, Nicole L. Scheuermann, Amy D. Parente, Jing Zhang
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (2): 253–268.
https://doi.org/10.1042/EBC20230074
Published: 03 October 2024
View article titled, Innovate and empower: the malate dehydrogenase course-based undergraduate research experiences and community of practice
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Articles

Gliotoxin and related metabolites as zinc chelators: implications and exploitation to overcome antimicrobial resistance

Shane G. Downes, Sean Doyle, Gary W. Jones, Rebecca A. Owens
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (5): 769–780.
https://doi.org/10.1042/EBC20220222
Published: 13 September 2023
View article titled, Gliotoxin and related metabolites as zinc chelators: implications and exploitation to overcome antimicrobial resistance
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Articles

Saccharomyces cerevisiae as a tool for deciphering Hsp90 molecular chaperone function

Sarah J. Backe, Mehdi Mollapour, Mark R. Woodford
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (5): 781–795.
https://doi.org/10.1042/EBC20220224
Published: 13 September 2023
View article titled, Saccharomyces cerevisiae as a tool for deciphering Hsp90 molecular chaperone function
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Articles

In silico modelling of the function of disease-related CAZymes

Alba Nin-Hill, Beatriz Piniello, Carme Rovira
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 355–372.
https://doi.org/10.1042/EBC20220218
Published: 18 April 2023
View article titled, In silico modelling of the function of disease-related CAZymes
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Articles

Seeing the complete picture: proteins in top-down mass spectrometry

Tanja Habeck, Frederik Lermyte
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 283–300.
https://doi.org/10.1042/EBC20220098
Published: 29 March 2023
View article titled, Seeing the complete picture: proteins in top-down mass spectrometry
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Articles

Structural mass spectrometry approaches to understand multidrug efflux systems

Benjamin Russell Lewis, Ryan Lawrence, Dietmar Hammerschmid, Eamonn Reading
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 255–267.
https://doi.org/10.1042/EBC20220190
Published: 29 March 2023
View article titled, Structural mass spectrometry approaches to understand multidrug efflux systems
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Articles

Controlling amyloid formation of intrinsically disordered proteins and peptides: slowing down or speeding up?

Yong Xu, Roberto Maya-Martinez, Sheena E. Radford
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 959–975.
https://doi.org/10.1042/EBC20220046
Published: 16 December 2022
View article titled, Controlling amyloid formation of intrinsically disordered proteins and peptides: slowing down or speeding up?
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Articles

Case study: Co-creating a flipped feed-in approach to a virtual biochemistry lab assessment: increasing student achievement and engagement in a large, diverse cohort

Shabana Cassambai, Hannah Bridge, Palak K. Gill, Similoluwa Shobaloju, Tiziana Sgamma, Jo V. Rushworth
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 29–37.
https://doi.org/10.1042/EBC20210051
Published: 29 April 2022
View article titled, Case study: Co-creating a flipped feed-in approach to a virtual biochemistry lab assessment: increasing student achievement and engagement in a large, diverse cohort
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Articles

Case study: Biochemistry without borders: a case study utilising infographics

Michelle A. Sahai, Anna Ivanova
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 65–73.
https://doi.org/10.1042/EBC20210040
Published: 29 April 2022
View article titled, Case study: Biochemistry without borders: a case study utilising infographics
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Articles

Nanopores: a versatile tool to study protein dynamics

In Collection
Protein structure and function
Sonja Schmid, Cees Dekker
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 93–107.
https://doi.org/10.1042/EBC20200020
Published: 16 April 2021
View article titled, Nanopores: a versatile tool to study protein dynamics
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Articles

Targeting RNA structures in diseases with small molecules

Yanqiu Shao, Qiangfeng Cliff Zhang
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 955–966.
https://doi.org/10.1042/EBC20200011
Published: 07 December 2020
View article titled, Targeting RNA structures in diseases with small molecules
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Articles

Detection methods of epitranscriptomic mark N 6 -methyladenosine

Ye Wang, Guifang Jia
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 967–979.
https://doi.org/10.1042/EBC20200039
Published: 07 December 2020
View article titled, Detection methods of epitranscriptomic mark N 6 -methyladenosine
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Articles

Specialized pro-resolving mediator network: an update on production and actions

Nan Chiang, Charles N. Serhan
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (3): 443–462.
https://doi.org/10.1042/EBC20200018
Published: 04 September 2020
View article titled, Specialized pro-resolving mediator network: an update on production and actions
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Articles

Jasmonates: biosynthesis, perception and signal transduction

Gareth Griffiths
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (3): 501–512.
https://doi.org/10.1042/EBC20190085
Published: 30 June 2020
View article titled, Jasmonates: biosynthesis, perception and signal transduction
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Articles

Moving forward with isoprostanes, neuroprostanes and phytoprostanes: where are we now?

Omar S. Ahmed, Jean-Marie Galano, Tereza Pavlickova, Johanna Revol-Cavalier, Claire Vigor, Jetty Chung-Yung Lee, Camille Oger, Thierry Durand
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (3): 463–484.
https://doi.org/10.1042/EBC20190096
Published: 30 June 2020
View article titled, Moving forward with isoprostanes, neuroprostanes and phytoprostanes: where are we now?
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Articles

Introduction to approaches and tools for the evaluation of protein cysteine oxidation

Leslie B. Poole, Cristina M. Furdui, S. Bruce King
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 1–17.
https://doi.org/10.1042/EBC20190050
Published: 07 February 2020
View article titled, Introduction to approaches and tools for the evaluation of protein cysteine oxidation
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Articles

Persulfides, at the crossroads between hydrogen sulfide and thiols

Dayana Benchoam, Ernesto Cuevasanta, Matías N. Möller, Beatriz Alvarez
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 155–168.
https://doi.org/10.1042/EBC20190049
Published: 04 February 2020
View article titled, Persulfides, at the crossroads between hydrogen sulfide and thiols
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Articles

3-Nitrotyrosine and related derivatives in proteins: precursors, radical intermediates and impact in function

Nicolás Campolo, Federico M. Issoglio, Darío A. Estrin, Silvina Bartesaghi, Rafael Radi
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 111–133.
https://doi.org/10.1042/EBC20190052
Published: 04 February 2020
View article titled, 3-Nitrotyrosine and related derivatives in proteins: precursors, radical intermediates and impact in function
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Articles

Dicarbonyl derived post-translational modifications: chemistry bridging biology and aging-related disease

Christian Sibbersen, Mogens Johannsen
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 97–110.
https://doi.org/10.1042/EBC20190057
Published: 15 January 2020
View article titled, Dicarbonyl derived post-translational modifications: chemistry bridging biology and aging-related disease
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Articles

Radical rearrangement and transfer reactions in proteins

Christian Schöneich
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 87–96.
https://doi.org/10.1042/EBC20190046
Published: 10 January 2020
View article titled, Radical rearrangement and transfer reactions in proteins
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Articles

Common modifications of selenocysteine in selenoproteins

Elias S.J. Arnér
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 45–53.
https://doi.org/10.1042/EBC20190051
Published: 23 December 2019
View article titled, Common modifications of selenocysteine in selenoproteins
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Articles

Photo-induced protein oxidation: mechanisms, consequences and medical applications

Eduardo Fuentes-Lemus, Camilo López-Alarcón
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 33–44.
https://doi.org/10.1042/EBC20190044
Published: 17 December 2019
View article titled, Photo-induced protein oxidation: mechanisms, consequences and medical applications
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Articles

Lysyl oxidases: from enzyme activity to extracellular matrix cross-links

Sylvain D. Vallet, Sylvie Ricard-Blum
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (3): 349–364.
https://doi.org/10.1042/EBC20180050
Published: 05 September 2019
View article titled, Lysyl oxidases: from enzyme activity to extracellular matrix cross-links
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Articles

Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells

Alexander R. Nödling, Luke A. Spear, Thomas L. Williams, Louis Y.P. Luk, Yu-Hsuan Tsai
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (2): 237–266.
https://doi.org/10.1042/EBC20180042
Published: 15 May 2019
View article titled, Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells
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Articles

Current perspectives in fragment-based lead discovery (FBLD)

Bas Lamoree, Roderick E. Hubbard
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (5): 453–464.
https://doi.org/10.1042/EBC20170028
Published: 08 November 2017
View article titled, Current perspectives in fragment-based lead discovery (FBLD)
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Articles

Molecular recognition of ternary complexes: a new dimension in the structure-guided design of chemical degraders

Scott J. Hughes, Alessio Ciulli
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (5): 505–516.
https://doi.org/10.1042/EBC20170041
Published: 08 November 2017
View article titled, Molecular recognition of ternary complexes: a new dimension in the structure-guided design of chemical degraders
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Articles

The SGC beyond structural genomics: redefining the role of 3D structures by coupling genomic stratification with fragment-based discovery

Anthony R. Bradley, Aude Echalier, Michael Fairhead, Claire Strain-Damerell, Paul Brennan, Alex N. Bullock, Nicola A. Burgess-Brown, Elisabeth P. Carpenter, Opher Gileadi, Brian D. Marsden, Wen Hwa Lee, Wyatt Yue, Chas Bountra, Frank von Delft
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (5): 495–503.
https://doi.org/10.1042/EBC20170051
Published: 08 November 2017
View article titled, The SGC beyond structural genomics: redefining the role of 3D structures by coupling genomic stratification with fragment-based discovery
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Articles

Mass spectrometry for fragment screening

Daniel Shiu-Hin Chan, Andrew J. Whitehouse, Anthony G. Coyne, Chris Abell
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (5): 465–473.
https://doi.org/10.1042/EBC20170071
Published: 06 October 2017
View article titled, Mass spectrometry for fragment screening
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Articles

Protein degradation: a validated therapeutic strategy with exciting prospects

Honorine Lebraud, Tom D. Heightman
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (5): 517–527.
https://doi.org/10.1042/EBC20170030
Published: 02 October 2017
View article titled, Protein degradation: a validated therapeutic strategy with exciting prospects
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Articles

Essential chemistry for biochemists

Amanda L. Jonsson, Mark A.J. Roberts, J.L. Kiappes, Kathryn A. Scott
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (4): 401–427.
https://doi.org/10.1042/EBC20160094
Published: 26 September 2017
View article titled, Essential chemistry for biochemists
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Articles

Biological functions controlled by manganese redox changes in mononuclear Mn-dependent enzymes

Wen Zhu, Nigel G.J. Richards
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 259–270.
https://doi.org/10.1042/EBC20160070
Published: 09 May 2017
View article titled, Biological functions controlled by manganese redox changes in mononuclear Mn-dependent enzymes
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Articles

Repurposing proteins for new bioinorganic functions

Lewis A. Churchfield, Athira George, F. Akif Tezcan
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 245–258.
https://doi.org/10.1042/EBC20160068
Published: 09 May 2017
View article titled, Repurposing proteins for new bioinorganic functions
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Articles

Cluster assembly in nitrogenase

Nathaniel S. Sickerman, Lee A. Rettberg, Chi Chung Lee, Yilin Hu, Markus W. Ribbe
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 271–279.
https://doi.org/10.1042/EBC20160071
Published: 09 May 2017
View article titled, Cluster assembly in nitrogenase
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Articles

Long-range proton-coupled electron transfer in the Escherichia coli class Ia ribonucleotide reductase

Steven Y. Reece, Mohammad R. Seyedsayamdost
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 281–292.
https://doi.org/10.1042/EBC20160072
Published: 09 May 2017
View article titled, Long-range proton-coupled electron transfer in the Escherichia coli class Ia ribonucleotide reductase
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Articles

Quantum chemical approaches to [NiFe] hydrogenase

Valerie Vaissier, Troy Van Voorhis
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 293–303.
https://doi.org/10.1042/EBC20160079
Published: 09 May 2017
View article titled, Quantum chemical approaches to [NiFe] hydrogenase
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Articles

Innovative approaches to treat Staphylococcus aureus biofilm-related infections

Katharina Richter, Freija Van den Driessche, Tom Coenye
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 61–70.
https://doi.org/10.1042/EBC20160056
Published: 03 March 2017
View article titled, Innovative approaches to treat Staphylococcus aureus biofilm-related infections
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Articles

Microfluidics: innovative approaches for rapid diagnosis of antibiotic-resistant bacteria

Amornrat Aroonnual, Tavan Janvilisri, Puey Ounjai, Surang Chankhamhaengdecha
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 91–101.
https://doi.org/10.1042/EBC20160059
Published: 03 March 2017
View article titled, Microfluidics: innovative approaches for rapid diagnosis of antibiotic-resistant bacteria
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Articles

Antibiotic–non-antibiotic combinations for combating extremely drug-resistant Gram-negative ‘superbugs’

Elena K. Schneider, Felisa Reyes-Ortega, Tony Velkov, Jian Li
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 115–125.
https://doi.org/10.1042/EBC20160058
Published: 03 March 2017
View article titled, Antibiotic–non-antibiotic combinations for combating extremely drug-resistant Gram-negative ‘superbugs’
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Articles

Polishing the tarnished silver bullet: the quest for new antibiotics

Mark A.T. Blaskovich, Mark S. Butler, Matthew A. Cooper
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 103–114.
https://doi.org/10.1042/EBC20160077
Published: 03 March 2017
View article titled, Polishing the tarnished silver bullet: the quest for new antibiotics
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Articles

Chaperone families and interactions in metazoa

Yael Bar-Lavan, Netta Shemesh, Anat Ben-Zvi
Journal: Essays in Biochemistry
Essays Biochem (2016) 60 (2): 237–253.
https://doi.org/10.1042/EBC20160004
Published: 15 October 2016
View article titled, Chaperone families and interactions in metazoa
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