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Articles

Sulfate: a neglected (but potentially highly relevant) anion

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Emil den Bakker, Desiree E.C. Smith, Martijn J.J. Finken, Mirjam M.C. Wamelink, Gajja S. Salomons, Jiddeke M. van de Kamp, Arend Bökenkamp
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (4): 391–399.
https://doi.org/10.1042/EBC20230097
Published: 04 December 2024
View articletitled, Sulfate: a neglected (but potentially highly relevant) anion
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Articles

Genetic variability in proteoglycan biosynthetic genes reveals new facets of heparan sulfate diversity

Open Access
Mohand Ouidir Ouidja, Denis S.F. Biard, Minh Bao Huynh, Xavier Laffray, Wilton Gomez-Henao, Sandrine Chantepie, Gael Le Douaron, Nicolas Rebergue, Auriane Maïza, Heloise Merrick, Aubert De Lichy, Alwyn Dady, Oscar González-Velasco, Karla Rubio, Guillermo Barreto, Kévin Baranger, Valerie Cormier-Daire, Javier De Las Rivas, David G. Fernig, Dulce Papy-Garcia
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (4): 555–578.
https://doi.org/10.1042/EBC20240106
Published: 04 December 2024
View articletitled, Genetic variability in proteoglycan biosynthetic genes reveals new facets of heparan sulfate diversity
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Articles

Understanding metabolic plasticity at single cell resolution

Open Access
Christina C. Abbate, Jason Hu, John G. Albeck
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (3): 273–281.
https://doi.org/10.1042/EBC20240002
Published: 18 November 2024
View articletitled, Understanding metabolic plasticity at single cell resolution
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Articles

Malate dehydrogenase (MDH) in cancer: a promiscuous enzyme, a redox regulator, and a metabolic co-conspirator

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Betsy Leverett, Shane Austin, Jason Tan-Arroyo
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (2): 135–146.
https://doi.org/10.1042/EBC20230088
Published: 03 October 2024
View articletitled, Malate dehydrogenase (MDH) in cancer: a promiscuous enzyme, a redox regulator, and a metabolic co-conspirator
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Articles

Understanding and computational design of genetic circuits of metabolic networks

Open Access
Alicia Berkvens, Luis Salinas, Maaike Remeijer, Robert Planqué, Bas Teusink, Frank J. Bruggeman
Journal: Essays in Biochemistry
Essays Biochem (2024) 68 (1): 41–51.
https://doi.org/10.1042/EBC20230045
Published: 30 April 2024
View articletitled, Understanding and computational design of genetic circuits of metabolic networks
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Articles

The role of the Mediator complex in fungal pathogenesis and response to antifungal agents

Open Access
James O'Connor-Moneley, Leenah Alaalm, Gary P. Moran, Derek J. Sullivan
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (5): 843–851.
https://doi.org/10.1042/EBC20220238
Published: 13 September 2023
View articletitled, The role of the Mediator complex in fungal pathogenesis and response to antifungal agents
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Articles

Branched-chain amino acid biosynthesis in fungi

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Joel T. Steyer, Richard B. Todd
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (5): 865–876.
https://doi.org/10.1042/EBC20230003
Published: 13 September 2023
View articletitled, Branched-chain amino acid biosynthesis in fungi
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Articles

Long-term plasticity of astrocytic phenotypes and their control by neurons in health and disease

Open Access
Kyle S. Wardlaw, Giles E. Hardingham
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (1): 39–47.
https://doi.org/10.1042/EBC20220090
Published: 03 March 2023
View articletitled, Long-term plasticity of astrocytic phenotypes and their control by neurons in health and disease
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Articles

Eco-Evo-Devo of petal pigmentation patterning

Open Access
Alice L.M Fairnie, May T.S. Yeo, Stefano Gatti, Emily Chan, Valentina Travaglia, Joseph F. Walker, Edwige Moyroud
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (6): 753–768.
https://doi.org/10.1042/EBC20220051
Published: 08 December 2022
View articletitled, Eco-Evo-Devo of petal pigmentation patterning
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Articles

Can changes in 3D genome architecture create new regulatory landscapes that contribute to phenotypic evolution?

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Ella Preger-Ben Noon, Nicolás Frankel
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (6): 745–752.
https://doi.org/10.1042/EBC20220057
Published: 08 December 2022
View articletitled, Can changes in 3D genome architecture create new regulatory landscapes that contribute to phenotypic evolution?
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Articles

The road less travelled? Exploring the nuanced evolutionary consequences of duplicated genes

Open Access
Emily Anna Baker, Alison Woollard
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (6): 737–744.
https://doi.org/10.1042/EBC20220213
Published: 08 December 2022
View articletitled, The road less travelled? Exploring the nuanced evolutionary consequences of duplicated genes
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Articles

Transcriptional regulation of plant innate immunity

Open Access
Niels Aerts, Himanshu Chhillar, Pingtao Ding, Saskia C.M. Van Wees
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 607–620.
https://doi.org/10.1042/EBC20210100
Published: 30 September 2022
View articletitled, Transcriptional regulation of plant innate immunity
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Articles

Harnessing adult-plant resistance genes to deploy durable disease resistance in crops

Open Access
Eric Dinglasan, Sambasivam Periyannan, Lee T. Hickey
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 571–580.
https://doi.org/10.1042/EBC20210096
Published: 30 September 2022
View articletitled, Harnessing adult-plant resistance genes to deploy durable disease resistance in crops
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Articles

Unconventional R proteins in the botanical tribe Triticeae

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Naveenkumar Athiyannan, Lamia Aouini, Yajun Wang, Simon G. Krattinger
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 561–569.
https://doi.org/10.1042/EBC20210081
Published: 30 September 2022
View articletitled, Unconventional R proteins in the botanical tribe Triticeae
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Articles

Panoramic view of microRNAs in regulating cancer stem cells

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Yongzhi Zhao, Danduo Wei, Yitong Zhang, Junfang Ji
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (4): 345–358.
https://doi.org/10.1042/EBC20220007
Published: 16 September 2022
View articletitled, Panoramic view of microRNAs in regulating cancer stem cells
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Articles

Oncofetal proteins and cancer stem cells

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Qian Yan, Xiaona Fang, Chenxi Li, Ping Lan, Xinyuan Guan
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (4): 423–433.
https://doi.org/10.1042/EBC20220025
Published: 16 September 2022
View articletitled, Oncofetal proteins and cancer stem cells
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Articles

RNA-binding proteins and their role in translational regulation in plants

Open Access
José Antonio Duarte-Conde, Gemma Sans-Coll, Catharina Merchante
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (2): 87–97.
https://doi.org/10.1042/EBC20210069
Published: 05 August 2022
View articletitled, RNA-binding proteins and their role in translational regulation in plants
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Articles

Case study: Perspectives on the use of LEGO® bricks in the biochemistry classroom

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Shane Austin, Crystal-Ann Millar, Sherena Christmas
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 53–63.
https://doi.org/10.1042/EBC20210048
Published: 29 April 2022
View articletitled, Case study: Perspectives on the use of LEGO® bricks in the biochemistry classroom
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Includes: Supplementary data
Articles

Case Study: Implementation and evaluation of a team-based authentic research project module for large cohorts

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Torben Lund, Rosemary K. Clyne
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 45–51.
https://doi.org/10.1042/EBC20210053
Published: 29 April 2022
View articletitled, Case Study: Implementation and evaluation of a team-based authentic research project module for large cohorts
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Articles

The physiological role of estrogen receptor functional domains

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Yukitomo Arao, Kenneth S. Korach
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 867–875.
https://doi.org/10.1042/EBC20200167
Published: 26 November 2021
View articletitled, The physiological role of estrogen receptor functional domains
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Articles

Steroid receptor-coregulator transcriptional complexes: new insights from CryoEM

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Ping Yi, Xinzhe Yu, Zhao Wang, Bert W. O'Malley
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 857–866.
https://doi.org/10.1042/EBC20210019
Published: 26 November 2021
View articletitled, Steroid receptor-coregulator transcriptional complexes: new insights from CryoEM
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Articles

Orphan nuclear receptor 4A1 (NR4A1) and novel ligands

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Stephen Safe, Rupesh Shrestha, Kumaravel Mohankumar
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 877–886.
https://doi.org/10.1042/EBC20200164
Published: 26 November 2021
View articletitled, Orphan nuclear receptor 4A1 (NR4A1) and novel ligands
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Articles

Ligands and DNA in the allosteric control of retinoid receptors function

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Pierre Germain, Natacha Rochel, William Bourguet
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 887–899.
https://doi.org/10.1042/EBC20200168
Published: 26 November 2021
View articletitled, Ligands and DNA in the allosteric control of retinoid receptors function
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Articles

Roles of steroid receptors in the lung and COVID-19

Open Access
Damien A. Leach, Greg N. Brooke, Charlotte L. Bevan
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 1025–1038.
https://doi.org/10.1042/EBC20210005
Published: 26 November 2021
View articletitled, Roles of steroid receptors in the lung and COVID-19
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Articles

Mineralocorticoid receptor actions in cardiovascular development and disease

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Morag J. Young, Colin D. Clyne
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 901–911.
https://doi.org/10.1042/EBC20210006
Published: 26 November 2021
View articletitled, Mineralocorticoid receptor actions in cardiovascular development and disease
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Articles

Nuclear receptors: from molecular mechanisms to therapeutics

Open Access
Daniel E. Frigo, Maria Bondesson, Cecilia Williams
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 847–856.
https://doi.org/10.1042/EBC20210020
Published: 26 November 2021
View articletitled, Nuclear receptors: from molecular mechanisms to therapeutics
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Articles

Long non-coding RNAs and splicing

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David Staněk
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 723–729.
https://doi.org/10.1042/EBC20200087
Published: 27 October 2021
View articletitled, Long non-coding RNAs and splicing
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Articles

Functional annotation of lncRNA in high-throughput screening

Open Access
Chi Wai Yip, Divya M. Sivaraman, Anika V. Prabhu, Jay W. Shin
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 761–773.
https://doi.org/10.1042/EBC20200061
Published: 27 October 2021
View articletitled, Functional annotation of lncRNA in high-throughput screening
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Articles

RNA:DNA triple helices: from peculiar structures to pervasive chromatin regulators

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Andreas Adam Greifenstein, SoYoung Jo, Holger Bierhoff
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 731–740.
https://doi.org/10.1042/EBC20200089
Published: 27 October 2021
View articletitled, RNA:DNA triple helices: from peculiar structures to pervasive chromatin regulators
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Articles

Non-coding RNA in cancer

Open Access
Huiwen Yan, Pengcheng Bu
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 625–639.
https://doi.org/10.1042/EBC20200032
Published: 27 October 2021
View articletitled, Non-coding RNA in cancer
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Articles

Circular RNAs as microRNA sponges: evidence and controversies

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Morten T. Jarlstad Olesen, Lasse S. Kristensen
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 685–696.
https://doi.org/10.1042/EBC20200060
Published: 27 October 2021
View articletitled, Circular RNAs as microRNA sponges: evidence and controversies
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Articles

Plant long non-coding RNAs in the regulation of transcription

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Julia A. Chekanova
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 751–760.
https://doi.org/10.1042/EBC20200090
Published: 27 October 2021
View articletitled, Plant long non-coding RNAs in the regulation of transcription
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Articles

The non-coding genome in genetic brain disorders: new targets for therapy?

Open Access
Eva Medico-Salsench, Faidra Karkala, Kristina Lanko, Tahsin Stefan Barakat
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 671–683.
https://doi.org/10.1042/EBC20200121
Published: 27 October 2021
View articletitled, The non-coding genome in genetic brain disorders: new targets for therapy?
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Articles

Microbial cell factories for the production of polyhydroxyalkanoates

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Dillirani Nagarajan, Ganies Riza Aristya, Yu-Ju Lin, Jui-Jen Chang, Hong-Wei Yen, Jo-Shu Chang
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 337–353.
https://doi.org/10.1042/EBC20200142
Published: 26 July 2021
View articletitled, Microbial cell factories for the production of polyhydroxyalkanoates
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Articles

Towards robust Pseudomonas cell factories to harbour novel biosynthetic pathways

Open Access
Nora Lisa Bitzenhofer, Luzie Kruse, Stephan Thies, Benedikt Wynands, Thorsten Lechtenberg, Jakob Rönitz, Ekaterina Kozaeva, Nicolas Thilo Wirth, Christian Eberlein, Karl-Erich Jaeger, Pablo Iván Nikel, Hermann J. Heipieper, Nick Wierckx, Anita Loeschcke
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 319–336.
https://doi.org/10.1042/EBC20200173
Published: 26 July 2021
View articletitled, Towards robust Pseudomonas cell factories to harbour novel biosynthetic pathways
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Articles

Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments

Open Access
Georgeos Hardo, Somenath Bakshi
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 67–79.
https://doi.org/10.1042/EBC20200015
Published: 16 April 2021
View articletitled, Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments
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Articles

Organization and function of paraspeckles

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Yang Wang, Ling-Ling Chen
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 875–882.
https://doi.org/10.1042/EBC20200010
Published: 07 December 2020
View articletitled, Organization and function of paraspeckles
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Articles

Out or decay: fate determination of nuclear RNAs

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Jianshu Wang, Hong Cheng
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 895–905.
https://doi.org/10.1042/EBC20200005
Published: 07 December 2020
View articletitled, Out or decay: fate determination of nuclear RNAs
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Articles

The diversity of post-transcriptional gene silencing mediated by small silencing RNAs in plants

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Huijuan Tan, Bosheng Li, Hongwei Guo
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 919–930.
https://doi.org/10.1042/EBC20200006
Published: 07 December 2020
View articletitled, The diversity of post-transcriptional gene silencing mediated by small silencing RNAs in plants
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Articles

An emerging role of chromatin-interacting RNA-binding proteins in transcription regulation

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Xian Du, Rui Xiao
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 907–918.
https://doi.org/10.1042/EBC20200004
Published: 07 December 2020
View articletitled, An emerging role of chromatin-interacting RNA-binding proteins in transcription regulation
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Includes: Supplementary data
Articles

microRNA regulation of pluripotent state transition

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Shao-Hua Wang, Chao Zhang, Yangming Wang
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 947–954.
https://doi.org/10.1042/EBC20200028
Published: 07 December 2020
View articletitled, microRNA regulation of pluripotent state transition
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Articles

Enhancer RNA: biogenesis, function, and regulation

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Rong Ye, Changchang Cao, Yuanchao Xue
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 883–894.
https://doi.org/10.1042/EBC20200014
Published: 07 December 2020
View articletitled, Enhancer RNA: biogenesis, function, and regulation
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Articles

Processing of coding and non-coding RNAs in plant development and environmental responses

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Fuyan Si, Xiaofeng Cao, Xianwei Song, Xian Deng
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 931–945.
https://doi.org/10.1042/EBC20200029
Published: 07 December 2020
View articletitled, Processing of coding and non-coding RNAs in plant development and environmental responses
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Articles

The role of DNA damage response in amyotrophic lateral sclerosis

Open Access
Yu Sun, Annabel J. Curle, Arshad M. Haider, Gabriel Balmus
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (5): 847–861.
https://doi.org/10.1042/EBC20200002
Published: 20 October 2020
View articletitled, The role of DNA damage response in amyotrophic lateral sclerosis
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Articles

Jack of all trades? The versatility of RNA in DNA double-strand break repair

Open Access
Ruth F. Ketley, Monika Gullerova
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (5): 721–735.
https://doi.org/10.1042/EBC20200008
Published: 03 July 2020
View articletitled, Jack of all trades? The versatility of RNA in DNA double-strand break repair
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Articles

DNA methylation at the crossroads of gene and environment interactions

Open Access
Pui-Pik Law, Michelle L. Holland
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (6): 717–726.
https://doi.org/10.1042/EBC20190031
Published: 29 November 2019
View articletitled, DNA methylation at the crossroads of gene and environment interactions
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Articles

The influence of DNA methylation on monoallelic expression

Open Access
Simão Teixeira da Rocha, Anne-Valerie Gendrel
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (6): 663–676.
https://doi.org/10.1042/EBC20190034
Published: 29 November 2019
View articletitled, The influence of DNA methylation on monoallelic expression
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Articles

The role and mechanisms of DNA methylation in the oocyte

Open Access
Gintarė Sendžikaitė, Gavin Kelsey
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (6): 691–705.
https://doi.org/10.1042/EBC20190043
Published: 29 November 2019
View articletitled, The role and mechanisms of DNA methylation in the oocyte
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Articles

DNA methylation in the vertebrate germline: balancing memory and erasure

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Oscar Ortega-Recalde, Timothy Alexander Hore
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (6): 649–661.
https://doi.org/10.1042/EBC20190038
Published: 22 November 2019
View articletitled, DNA methylation in the vertebrate germline: balancing memory and erasure
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Articles

Sensitivity of transcription factors to DNA methylation

Open Access
Éléa Héberlé, Anaïs Flore Bardet
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (6): 727–741.
https://doi.org/10.1042/EBC20190033
Published: 22 November 2019
View articletitled, Sensitivity of transcription factors to DNA methylation
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